Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3072 ATGGGGTTCCAAATTTTACTATTGACGTATTTCATAGTGTCGTTGGTTATTTTTCAACATGGGAATTGCCAAAGAGTTAACGTTGGTGGCGGTTTCGTTCAAAGAAAAGGTACTCATTTTATTCTGAATGGAAAGACACACTATGTGAATGGATTCAATTCCTACTGGTTGATGACAATGGCATCTGACCCATCTACAAGGGTCAAGGTCACGTCCAATTTTCAACAAGCTTCTCAACATGGTTTAAATGTGGGAAGAACATTGGCTTTCAACGATGGAGATTATAAACCTCTTCAGATCTCTCCTGGCAAGTACGATGAAAATGTCTTCAAGGGATTGGATTTTGTGATATCAGAGGCAAACAAATATGGAGTGAAACTTATACTGAGCTTAGTGAATAATTGGAATGATTTTGGAGGCAAAAAGAAATATGTGCAGTGGGCAAGAGAACGTGGTCAAAATGTCAAAATTGAAGATGACTTCTTTATTAATCCTCTTGTTAAGCAATACTACAAAAACAATGTTAAGGCTGTGCTGACAAGAAAGAACACCATTAATGGAGTATTGTATAAGGATGACCCAACCATTTTTGCATGGGAGCTTATGAATGAACCTCGTTGCATATTTAATGACTCCGGAAAATCAATTCAGAATTGGGTTGTTGAGATGGCGGCCTATGTCAAATCCATTGATAGCAATCATTTGCTGGAAATAGGACTTGAAGGGTTCTACGGTGAAACGATGCCACAAAAGAAGCTATTCAATCCCAATTCTCTTCCGGTTGGAACTGATTTTATCTCCAACAATCAAATTCCTCAAATTGATTTTGCAACCATTCATTTATACCCCGATACATGGTTACAAGGCTCAAACGAGACAGCCAAAAGTGCATTTGTTGACAAATGGATAGAAGCTCATTTTCATGACTCAAATACTATTTTAGGAAAACCCATTATTGTACAAGAGTTTGGAAAGTCTTCAAAGACACCTGGATTTAGCATAGCTATAAGGGATAGTTACTTTAAGAAAGTATACAATGCCATATCTAAAAGTGCTATGAGTGGAGGCTCATGTGCAGGTGGAATTTTCTGGCTACTTCTGTCTCAAGGAATGGATACCTATGGAGATGGCTATGAAGTCATTTTTGAGAACAATCCTTCAACTGCCGAGGTCATCAAACAACAATCTGTGACAATGTCAAAAATCAAATAG 1212 0.3771 MGFQILLLTYFIVSLVIFQHGNCQRVNVGGGFVQRKGTHFILNGKTHYVNGFNSYWLMTMASDPSTRVKVTSNFQQASQHGLNVGRTLAFNDGDYKPLQISPGKYDENVFKGLDFVISEANKYGVKLILSLVNNWNDFGGKKKYVQWARERGQNVKIEDDFFINPLVKQYYKNNVKAVLTRKNTINGVLYKDDPTIFAWELMNEPRCIFNDSGKSIQNWVVEMAAYVKSIDSNHLLEIGLEGFYGETMPQKKLFNPNSLPVGTDFISNNQIPQIDFATIHLYPDTWLQGSNETAKSAFVDKWIEAHFHDSNTILGKPIIVQEFGKSSKTPGFSIAIRDSYFKKVYNAISKSAMSGGSCAGGIFWLLLSQGMDTYGDGYEVIFENNPSTAEVIKQQSVTMSKIK* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3072 403 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 1 9 403 - -
Mtr1g3072 403 SUPERFAMILY (Trans)glycosidases 29 388 IPR017853 -
Mtr1g3072 403 Gene3D Glycosidases 30 403 - -
Mtr1g3072 403 PANTHER - 9 403 IPR045053 GO:0004553
Mtr1g3072 403 Pfam Cellulase (glycosyl hydrolase family 5) 51 350 IPR001547 GO:0004553|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3072 Mtr-Chr1 42015529 42018006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3072 26 403 Glycoside Hydrolase AT1G02310 56.736 3.88e-158 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3072 K19355 - gmx:100791612 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3072 1 42015529 42018006 Mtr1g3072 1 42015529 42018006 ECH