Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2994 ATGACTTCGTTGAGTAGAGAATTGGTTTTTCTCATACTTCAGTTTCTTGATGAGGAGAAGTTCAAGGAATCTGTGCACAAGCTCGAGAAAGAATCAGGGTTCTTTTTCAACATGAAGTACTTTGAGGAAAAAGTGCAGGCTGGTGAATGGGAAGAAGTTGAAAAGTATTTAGCAGGGTTTACCAAAGTTGATGATAATAGATACTCAATGAAAATATTCTTTGAAATTAGGAAGCAGAAATATCTGGAAGCACTTGACCGGCAAGACAAACCAAAGGCTGTAGAGATATTAGTTGGTGATTTAAAAGTGTTCTCGACCTTTAATGAGGAACTATACAAAGAAATCACCCAGCTGTTAATTCTTAATAATTTCAGGGAGAACGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAAGTATTATGTTGATCGAACTAAAAAAACTCATAGAGGCAAATCCTCTTTTCCGTGATAAGCTTGCCTTCCCGACACTCAAGTCGTCAAGACTAAGAACTTTAATCAATCAGAGTCTGAACTGGCAGCACCAGCTTTGTAAAAACCCAAGGCCAAACCCAGATATAAAGACTTTATTTATAGACCACACTTGTTCACCTTCTAATGGTCCACTGGCACCTACACCTGTCAATCTTCCAATTTCTGCAGTTGCAAAGCCTGTTGCTTATACTTCACTTGGAGCTCATGGTCCCTTCCCTCCTAATGTTGCAACTGCAAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTTCAAGCAGCTGTTGTCACATCGTCAACCATGCCGGTCCCTCAGAATCAAGTATCTATCTTGAAACGTCCTAGGACTCCTCCGGCAACTCCTGGGATTGTTGACTATCAGAACACTGATCATGAACAGTTAATGAAAAGGCTTCGTCCAGGTCATTCTGTTGAGGAGGTTTCCTATCCCGTGGCTCGACAAGCCTCTTGGTCACTGGATGATCTCCCAAGAACAGTGGCTATGACTTTGCATCAAGGATCCTCTGTGACAAGCTTGGATTTTCATCCTTCGCACCACACCCTACTTCTTGTTGGCTCTAGTAATGGTGAAATAACCCTCTGGGAACTCAGTTTACGAGAAAGGTTGGTCTCAAAGCCGTTCAAGATATGGGATGTGTCGGCATGCTCATTACCATTTCAGGCAGCTGCAGTCAAGGATGCACCTATTTCTGTCAGTCGTGTCACATGGAGCCCTGATGGAAATTTTGTGGGTGTTGCATTTACTAAACATCTGATTCATTTATATGCCTACACCGGGTCAAATGAGCTAGCCCAGCGAATAGAGGTTGATGCCCATGTTGGTGGTGTGAATGATTTGTCATTTGCTCTTCCAAATAAACAGCTGTGCATTGTAACTTGTGGTGATGATAAGTTGATAAAGGTGTGGGATGCAAATGGACGAAGACTATTTACCTTTGAGGGGCATGATGCGCCTGTATATTCAATCTGTCCTCATCACAAAGAGAACATTCAGTTCATATTTTCAACAGCCATTGATGGGAAAATAAAGGCCTGGTTATACGATAACATGGGTTCTAGGGTCGACTATGATGCTCCTGGTCATTGGTGTACTACAATGCTTTACAGTGCCGACGGAAGTAGATTGTTTTCTTGTGGGACAAGTAAAGATGGAGAGTCTTTCCTTGTTGAATGGAATGAAAGCGAAGGAGCCATTAAGAGAACGTACAATGGATTTAGAAAGAAATCTAATGGCGTCGTGCAGTTTGACACAACTCAAAATCGCTTTCTGGTTGCGGGTGAAGACGGTCAATTGAAGTTTTGGGACATGGACAATATTAATCTTCTAGCAAGCACTGATGCTGATGGTGGATTGCAGGGCCTTCCACGCTTGAAATTCAATAAGGAGGGAAATATTCTTGCTGTTACTACTGTGGACAATGGGTTCAAGATAATGGCAAATGCTACTGGTCTTAGATCCTTAAGAACAATTGAAACTCCAGCATTTGAAGCATTGAGGTCACCCATTGAATCTACTTCAATCAAGGTATCCGGCTCTTCTACTGCTAATGTTAGTCCCGTCAACTGTAAAGTGGAAAGAAGCTCTCCTGTCAGGCCGCCTCCTATTCTTAATGGAGTTGATCCCATGAGTCGAAGTGTAGAGAAATCAAGAGTGGAAGATGCAACGGATAGAACTAAATCATGGCAATTGACTGAAATTTTGGATCCTGTCCAATGTCGCTCAGTGACCATGCCTGACACCACAGACTCTTTCAGCAAGGTTGTACGGCTTTTATATACAAATTCTGCTGTTGGTATTTTGGCCCTTGGTTCAAATGGTGTCCAGAAGCTTTGGAAATGGGCTCGCAATGAACAAAATCCCACTGGGAAGGCAACTGCCAGTGTTGTTCCACAACGTTGGCAACCCAACAGTGGTCTTCTTATGACTAACGATATCGCGGGCGTCAACCTTGAAGAAGCAGTCCCTTGCATTGCACTCTCAAAAAATGACTCTTATGTTATGTCTGCCTGTGGTGGAAAAGTTTCACTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCTCCTGCATCTACTTTCCTAGCTTTCCATCCTCAGGATAACAACATTATATCCATTGGGATGGAGGATTCAACCATTCACATCTATAATGTCAGAGTGGATGAGGTGAAATCAAAATTGAAGGGTCACCAGAGACGAATTACTGGTTTAGCCTTTTCAACCAATCTTAACATCCTGGTTTCATCCGGCGCTGATGCTCAAATGTGTGTGTGGAGCATTGATACATGGGAGAAAAGAAAATCAATTCCAATTCAACTACCTGCGGGAAAGTCACCAGTTGGTGATACACGTGTTCAGTTCCATTCTGACCAAATTCGCTTATTGGTAGTCCATGAAACTCAATTGGCAATATATGATGGCTCCAAGATGGAACGCATTCGGCAGTGGATTCCCCAAGATGCTCTGTCTGCTCCCATATCATATGCAGCATATTCCTGCAACAGTCAGTTAATATATGCTTCATTTTGTGATGCAAACATTGGGGTTTTCGATGCTGATAGCTTGAGGTTAAGATGTCGTATTGCACCACCAATATGCTTGTCGTCAGCCGCTTTAAGTAGAAGCCAAGCTGTGTATCCTCTTGTGATTGCGGCTCATCCACTAGAACCTAACCAATTTGCTGTTGGGTTGAGTGATGGGTCTGTCAAAGTGATAGAACCCAGTGAATCTGAGGGTAAGTGGGGATCGTCTCCACCTATGGACAACGGAATCATGAATGGTAAGGCCCCATCACCATCTACAACTAGCAACCACACAGCGGATCAGGCCCAACGATAA 3387 0.4314 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLAGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLILNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHTCSPSNGPLAPTPVNLPISAVAKPVAYTSLGAHGPFPPNVATANANALAGWMANASASSSVQAAVVTSSTMPVPQNQVSILKRPRTPPATPGIVDYQNTDHEQLMKRLRPGHSVEEVSYPVARQASWSLDDLPRTVAMTLHQGSSVTSLDFHPSHHTLLLVGSSNGEITLWELSLRERLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDGNFVGVAFTKHLIHLYAYTGSNELAQRIEVDAHVGGVNDLSFALPNKQLCIVTCGDDKLIKVWDANGRRLFTFEGHDAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSNGVVQFDTTQNRFLVAGEDGQLKFWDMDNINLLASTDADGGLQGLPRLKFNKEGNILAVTTVDNGFKIMANATGLRSLRTIETPAFEALRSPIESTSIKVSGSSTANVSPVNCKVERSSPVRPPPILNGVDPMSRSVEKSRVEDATDRTKSWQLTEILDPVQCRSVTMPDTTDSFSKVVRLLYTNSAVGILALGSNGVQKLWKWARNEQNPTGKATASVVPQRWQPNSGLLMTNDIAGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIISIGMEDSTIHIYNVRVDEVKSKLKGHQRRITGLAFSTNLNILVSSGADAQMCVWSIDTWEKRKSIPIQLPAGKSPVGDTRVQFHSDQIRLLVVHETQLAIYDGSKMERIRQWIPQDALSAPISYAAYSCNSQLIYASFCDANIGVFDADSLRLRCRIAPPICLSSAALSRSQAVYPLVIAAHPLEPNQFAVGLSDGSVKVIEPSESEGKWGSSPPMDNGIMNGKAPSPSTTSNHTADQAQR* 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2994 1128 Gene3D - 827 1106 IPR015943 GO:0005515
Mtr1g2994 1128 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 363 947 IPR011047 -
Mtr1g2994 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 383 IPR001680 GO:0005515
Mtr1g2994 1128 SUPERFAMILY C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 884 1092 IPR011048 -
Mtr1g2994 1128 SMART Lish 4 36 IPR006594 GO:0005515
Mtr1g2994 1128 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1128 IPR027728 GO:0006355
Mtr1g2994 1128 Gene3D - 326 561 IPR015943 GO:0005515
Mtr1g2994 1128 SMART WD40_4 992 1034 IPR001680 GO:0005515
Mtr1g2994 1128 SMART WD40_4 1055 1089 IPR001680 GO:0005515
Mtr1g2994 1128 SMART WD40_4 528 571 IPR001680 GO:0005515
Mtr1g2994 1128 SMART WD40_4 397 435 IPR001680 GO:0005515
Mtr1g2994 1128 SMART WD40_4 439 482 IPR001680 GO:0005515
Mtr1g2994 1128 SMART WD40_4 903 942 IPR001680 GO:0005515
Mtr1g2994 1128 SMART WD40_4 574 614 IPR001680 GO:0005515
Mtr1g2994 1128 SMART WD40_4 821 857 IPR001680 GO:0005515
Mtr1g2994 1128 SMART WD40_4 335 374 IPR001680 GO:0005515
Mtr1g2994 1128 SMART WD40_4 484 525 IPR001680 GO:0005515
Mtr1g2994 1128 SMART WD40_4 860 900 IPR001680 GO:0005515
Mtr1g2994 1128 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 910 945 - -
Mtr1g2994 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 910 951 IPR001680 GO:0005515
Mtr1g2994 1128 Gene3D - 562 672 IPR015943 GO:0005515
Mtr1g2994 1128 Pfam WD domain, G-beta repeat 343 373 IPR001680 GO:0005515
Mtr1g2994 1128 Pfam WD domain, G-beta repeat 909 942 IPR001680 GO:0005515
Mtr1g2994 1128 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Mtr1g2994 1128 MobiDBLite consensus disorder prediction 1110 1128 - -
Mtr1g2994 1128 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Mtr1g2994 1128 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Mtr1g2994 1128 PANTHER PROTEIN, PUTATIVE-RELATED 1 1128 - -
Mtr1g2994 1128 SMART ctlh 34 92 IPR006595 -
Mtr1g2994 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Mtr1g2994 1128 MobiDBLite consensus disorder prediction 697 720 - -
Mtr1g2994 1128 MobiDBLite consensus disorder prediction 1089 1128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2994 Mtr-Chr1 41105258 41114784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2994 429 642 Miscellaneous Gene Families AT5G08390 21.918 8.98e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2994 - - gmx:100793575 2100.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2994 1 41105258 41114784 Mtr1g2994 1 41105258 41114784 ECH
Mtr7g3628 7 53266105 53274603 Mtr1g2994 1 41105258 41114784 PCT