Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2804 ATGATCTCCGTCCAGGGAGATCACCATCGCCACCACTACAACCACCACTCTCAGCTTGTTGGCTCATCCGACAGCTCTCGGTTGCCGTTCACCGGAGATCGCGTTGAACCGTTCGCCGTTAAGCAAGAGCCATCGTCGCTTACGTTATTGCCTTTACGCGCTAATGATTCCAGTGAAGTTGATGAAGATTTACATTTGACTCTTGCACATCAAATGTACAAGAGTGGAAGTTATAAGAAAGCGTTGGAACACAGCAACACTGTCTATGAGAGAAATCCGCTTCGCACCGATAACTTACTACTCCTTGGTGCAATTTATTACCAGCTGCATGATTTTGATATGTGTGTGGCGAAAAATGAAGAAGCACTTAGGATCGAGCCACACTTTGCCGAGTGTTACGGTAATATGGCAAATGCATGGAAGGAAAAAGGCAACATTGACCTTGCAATTCGCTATTACTTGATTGCCATTGAGCTTCGTCCCAATTTTGCTGATGCATGGTCAAACCTAGCTAGTGCATACATGCGTAAAGGAAGACTTACTGAAGCAGCTCAATGTTGTCGTCAAGCACTTGCTATCAACCCTCTAATGGTTGATGCTCATAGTAACTTGGGTAATCTAATGAAAGCTCAAGGGTTGGTCCAAGAAGCATACAGTTGTTACCTCGAGGCATTGCGTATACAACCCACCTTTGCTATTGCATGGTCAAATCTTGCTGGCCTGTTCATGGAGTCTGGTGATTTCAACAGAGCCCTGCAGTATTACAAGGAAGCTGTTAAACTCAAACCTTCCTTCCCTGATGCATACTTGAACCTTGGGAATGTATACAAGGCTTTAGGGATGCCTCAAGAAGCTATTGCATGTTATCAACATGCTCTTCAGACTCGTCCAAACTATGGCATGGCTTATGGTAATTTGGCCAGTATACATTATGAGCAAGGTCAACTGGACATGGCAATTCTACACTACAAACAAGCTATTGCATGTGACCCCAGATTTTTGGAAGCTTACAATAATTTGGGTAATGCTCTGAAAGATGTTGGCAGAGTGGAGGAAGCAATCCAGTGCTATAATCAATGCCTTTCGTTACAGCCCAACCACCCACAAGCGTTGACCAATCTTGGAAATATATACATGGAATGGAATATGGTGGCTGCTGCTGCTTCATATTATAAAGCTACACTAAATGTAACCACTGGATTATCTGCACCGTATAACAACCTTGCTATAATATATAAGCAGCAGGGGAATTATGCAGATGCCATATCTTGCTACAATGAGGTTCTCCGCATTGATCCCTTGGCAGCTGATGGTCTTGTAAACAGAGGCAATACTTATAAGGAGATTGGTAGAGTCAGTGATGCTATCCAGGATTACATACGTGCGATCACTGTCAGGCCTACTATGGCTGAAGCTCATGCTAATTTGGCTTCTGCCTACAAAGATAGTGGACATGTAGAGGCGGCTGTAAAGAGCTACAGACAGGCATTGATTCTTCGTACAGACTTTCCTGAAGCAACTTGCAATCTTCTACATACACTTCAGTGTGTCTGTTGTTGGGAGGATCGTGATCAAATGTTCAAGGAAGTAGAAGGGATTATCAGAAGACAAATTAATATGTCAGTTCTTCCTAGTGTCCAGCCTTTCCATGCAATAGCATACCCACTTGACCCAATGCTTGCTCTGGAAATTAGCCGCAAATATGCTGCACACTGCTCTGTAATTGCATCTCGTTTCTCTCTTCCACCGTTTAGCCATCCTGCTCCTATTCCAATCAAGCAGGAGGGAGGTTATGAAAGACTAAGGATTGGGTATGTGAGTAGTGACTTTGGTAATCACCCATTGTCACATCTCATGGGATCTGTTTTCGGTATGCACAACAGAAAGAATGTGGAGGTATTCTGTTATGCCTTGAGTCCAAATGATGGTACTGAATGGAGACAGCGTATTCAATCTGAAGCAGAGCACTTTGTGGATGTATCTGCCATGACATCAGATACGATAGCAAAATTGATCAACGAGGATAAGATTCAAATCCTTATCAACCTCAATGGTTATACAAAGGGTGCGAGAAATGAGATATTTGCTATGAAACCTGCACCAGTCCAAGTTTCATATATGGGATTTCCTGGCACAACCGGAGCTACATACATAGATTACTTAGTCACTGATGAGTTTGTTTCACCTCTTCAGTATGCACATATCTACTCTGAAAAGATTGTCCATCTCCCGCATTGCTACTTTGTAAATGATTATAAACAGAAAAATCAGGATGTGTTGGATCCTAACTGTCAGCCGAAACGATCAGATTATGGTCTACCTGAGGATAAGTTTTTATTTGCATGCTTCAATCAACTTTACAAGATGGATCCTGAAATATTTAATACATGGTGCAATATACTTAAACGTGTACCCAACAGCGCGCTTTGGCTCTTGAAATTTCCCGCAGCAGGAGAAATGAGACTGAGGGCATATGCTGCTGCACAAGGGGTACAACCTGATCAAATTATCTTCACAGATGTTGCAATGAAGGGTGAACACATTAGACGGAGTTCCTTAGCAGACTTATTTCTAGACACGCCTTTATGCAATGCACATACTACAGGAACAGATATACTATGGGCAGGTCTGCCTATGGTTACTCTGCCTCTTGAGAAAATGGCTACTAGGGTTGCTGGCTCACTCTGTATTTCCACTGGACTGGGTGAGGAGATGATTGTCAGCAGTATGAAAGAGTATGAAGATAGAGCTGTATCACTTGCTCTGAATCGCCCAAAGCTTCAAGCTCTAACCGATAAGCTCAAATCTGTGCGTCTGACCTGTCCTCTCTTTGACACAAACCGATGGGTGAGAAATCTTGACAGAGCATATTTTAAAATGTGGAACCTGCATTGCACTGGTCAACGGCCACAACATTTTAAGGTCACTGAAAATGATAATGAATGTCCTTATGATAAATAG 2961 0.4282 MISVQGDHHRHHYNHHSQLVGSSDSSRLPFTGDRVEPFAVKQEPSSLTLLPLRANDSSEVDEDLHLTLAHQMYKSGSYKKALEHSNTVYERNPLRTDNLLLLGAIYYQLHDFDMCVAKNEEALRIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAYGNLASIHYEQGQLDMAILHYKQAIACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLSLQPNHPQALTNLGNIYMEWNMVAAAASYYKATLNVTTGLSAPYNNLAIIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAITVRPTMAEAHANLASAYKDSGHVEAAVKSYRQALILRTDFPEATCNLLHTLQCVCCWEDRDQMFKEVEGIIRRQINMSVLPSVQPFHAIAYPLDPMLALEISRKYAAHCSVIASRFSLPPFSHPAPIPIKQEGGYERLRIGYVSSDFGNHPLSHLMGSVFGMHNRKNVEVFCYALSPNDGTEWRQRIQSEAEHFVDVSAMTSDTIAKLINEDKIQILINLNGYTKGARNEIFAMKPAPVQVSYMGFPGTTGATYIDYLVTDEFVSPLQYAHIYSEKIVHLPHCYFVNDYKQKNQDVLDPNCQPKRSDYGLPEDKFLFACFNQLYKMDPEIFNTWCNILKRVPNSALWLLKFPAAGEMRLRAYAAAQGVQPDQIIFTDVAMKGEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGSLCISTGLGEEMIVSSMKEYEDRAVSLALNRPKLQALTDKLKSVRLTCPLFDTNRWVRNLDRAYFKMWNLHCTGQRPQHFKVTENDNECPYDK* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2804 986 Pfam Tetratricopeptide repeat 405 433 IPR001440 GO:0005515
Mtr1g2804 986 Pfam Tetratricopeptide repeat 164 195 IPR001440 GO:0005515
Mtr1g2804 986 ProSiteProfiles TPR repeat region circular profile. 402 433 - -
Mtr1g2804 986 ProSiteProfiles TPR repeat profile. 130 163 IPR019734 GO:0005515
Mtr1g2804 986 ProSiteProfiles TPR repeat profile. 232 265 IPR019734 GO:0005515
Mtr1g2804 986 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SEC ISOFORM X1-RELATED 37 986 - -
Mtr1g2804 986 Pfam Glycosyl transferase family 41 517 755 IPR029489 -
Mtr1g2804 986 Pfam Glycosyl transferase family 41 767 953 IPR029489 -
Mtr1g2804 986 MobiDBLite consensus disorder prediction 1 26 - -
Mtr1g2804 986 ProSiteProfiles TPR repeat region circular profile. 232 264 - -
Mtr1g2804 986 ProSiteProfiles TPR repeat region circular profile. 266 298 - -
Mtr1g2804 986 ProSiteProfiles TPR repeat profile. 198 231 IPR019734 GO:0005515
Mtr1g2804 986 ProSiteProfiles TPR repeat profile. 402 435 IPR019734 GO:0005515
Mtr1g2804 986 ProSiteProfiles TPR repeat profile. 266 299 IPR019734 GO:0005515
Mtr1g2804 986 SUPERFAMILY TPR-like 350 850 IPR011990 GO:0005515
Mtr1g2804 986 ProSiteProfiles TPR repeat region circular profile. 164 195 - -
Mtr1g2804 986 SMART tpr_5 62 95 IPR019734 GO:0005515
Mtr1g2804 986 SMART tpr_5 368 401 IPR019734 GO:0005515
Mtr1g2804 986 SMART tpr_5 334 367 IPR019734 GO:0005515
Mtr1g2804 986 SMART tpr_5 130 163 IPR019734 GO:0005515
Mtr1g2804 986 SMART tpr_5 266 299 IPR019734 GO:0005515
Mtr1g2804 986 SMART tpr_5 300 333 IPR019734 GO:0005515
Mtr1g2804 986 SMART tpr_5 436 469 IPR019734 GO:0005515
Mtr1g2804 986 SMART tpr_5 470 503 IPR019734 GO:0005515
Mtr1g2804 986 SMART tpr_5 198 231 IPR019734 GO:0005515
Mtr1g2804 986 SMART tpr_5 96 129 IPR019734 GO:0005515
Mtr1g2804 986 SMART tpr_5 164 197 IPR019734 GO:0005515
Mtr1g2804 986 SMART tpr_5 402 435 IPR019734 GO:0005515
Mtr1g2804 986 SMART tpr_5 232 265 IPR019734 GO:0005515
Mtr1g2804 986 ProSiteProfiles TPR repeat profile. 334 367 IPR019734 GO:0005515
Mtr1g2804 986 Gene3D Tetratricopeptide repeat domain 474 576 IPR011990 GO:0005515
Mtr1g2804 986 Gene3D Tetratricopeptide repeat domain 436 473 IPR011990 GO:0005515
Mtr1g2804 986 ProSiteProfiles TPR repeat profile. 470 503 IPR019734 GO:0005515
Mtr1g2804 986 ProSiteProfiles TPR repeat profile. 436 469 IPR019734 GO:0005515
Mtr1g2804 986 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT 37 986 IPR037919 GO:0006493|GO:0016757
Mtr1g2804 986 Pfam Tetratricopeptide repeat 130 162 IPR019734 GO:0005515
Mtr1g2804 986 Gene3D Tetratricopeptide repeat domain 65 434 IPR011990 GO:0005515
Mtr1g2804 986 Gene3D Glycogen Phosphorylase B; 765 939 - -
Mtr1g2804 986 ProSiteProfiles TPR repeat profile. 300 333 IPR019734 GO:0005515
Mtr1g2804 986 ProSiteProfiles TPR repeat profile. 164 197 IPR019734 GO:0005515
Mtr1g2804 986 SUPERFAMILY TPR-like 63 313 IPR011990 GO:0005515
Mtr1g2804 986 Gene3D - 591 764 - -
Mtr1g2804 986 Pfam TPR repeat 443 484 - -
Mtr1g2804 986 Pfam TPR repeat 309 348 - -
Mtr1g2804 986 Pfam TPR repeat 242 280 - -
Mtr1g2804 986 ProSiteProfiles TPR repeat region circular profile. 334 367 - -
Mtr1g2804 986 ProSiteProfiles TPR repeat profile. 96 129 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2804 Mtr-Chr1 39204249 39215696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2804 243 986 Glycosyltransferase AT3G04240 85.081 0.0 1380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2804 K09667 - gmx:100806661 1910.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2804 1 39204249 39215696 Mtr1g2804 1 39204249 39215696 ECH