Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2701 ATGTTCAACTTCTTCAAAAGATTATGCCTTCTAATATTTTTCCTCTTGCTATCCTTTGATGTTTCTGTGTGTTTATCTTCTTCACTTGGGAACTTCAAGTTTTGTTTGGATAATAACAAAATAAAAAACTTTACTGTTTTCCCTTACAAAGAACATGATCAATCCTATGCTAATGACTACTACAAAATTCTCAATTTTTCAGTTCAAAACCTTCGGTTCACGGAACCAAATATTCCTAAGCCAATAGCAATTGTCCTTCCAAAGACTTTGGTGCAGCTACAGAACAGTGTAGCATGCTGTAGAGAATTCTCTTTGGAAATAAGAGTGAGAAGTGGTGGACATAGCTATGAAGGAACTTCCTCTGTTGCTGATGATGGAACTCTTTTTGTCATCATTGACATGATGAATTTGAACCATGTTTGGGTGAATATGGAGACAAAAATAGCATGGGTTGAAGGTGGTGCCACATTGGGAGAAACTTACTATGCTATCTCTCAGGCTAGTGATGCATATGGATTCTCAGCTGGGTCATGTCCAACTGTAGGAGTTGGCGGACATATCGGTGGTGGTGGATTTGGTTTATTGTCTAGAAAATATGGACTTGCAGCCGATAATGTGGTCGATGCCCTTCTTGTTGATGCTGATGGACGAGTATTAGAACGTGCAACCATGGGAGAAGATGTGTTTTGGGCTATCAGAGGAGGAGGTGGTGGTCTTTGGGGAATTGTATATGCCTGGAAAATTCAATTGTTGAAAGTGCCACAAGTTGTAACCAGTTTCATTGCATCCAGAACAGGCACAAAAAATCATATTGCAAAGCTAGTGAACAAATGGCAACATGTGGCACCAAATTTGGAAGATGAGTTCTACTTGTCATGCTTTGTTGGTGCTGGTTTGCCTGAAGCTAAAAGAATAGGCTTATCAACAACATTTAAAGGGTTTTATCTTGGTCCCATGTCCAAGGCCATATCTATCTTGAATCAGGATTTTCCTGAATTGGATGTTGTAGATGAAGAATGTAGAGAAATGAGTTGGATTGAGTCAGTTGTTTTTTTCTCTGGACTAAATGATGGAGCTTCTGTTTCTGACTTGAGGAATAGGTATATGCAAGATAAAGAATATTTCAAGGCAAAATCAGATTTTGTAAGGAGCTATGTTCCTCTTGTAGGTATAAAAACTGCATTGGATATTCTAGAAAAGGAGCCTAAAGGGTTTGTTATTTTAGACCCTTATGGTGGGATGATGCATAATATAAGCAGTGAATCCATTGCTTTTCCCCACAGAAAAGGAAATATTTTTACAATTCAGTACCTGATATATTGGAAAGAAGCAGACAATGACAAAGGTAGTGATTATATTGATTGGATAAGAGGATTCTATTCTTCTATGACTCCTTTTGTTTCATATGGTCCAAGGGCTGCATATATTAATTACATGGATTTTGACCTTGGAGTAATGGAGCTAATTAGTTTTGATGATGATTTGGTGAAAGCAAGGGTTTGGGGTGAAAAGTACTTCTTGAGTAACTATGATAGACTTGTTAGGGCGAAGACTTTGATTGATCCTGACAATGTTTTCACCAATCAACAAGGCATTCTTCCTATGTCATTTGCTAGTTCCAATGCCAAAGAACTACTTAGTTCATAA 1647 0.3777 MFNFFKRLCLLIFFLLLSFDVSVCLSSSLGNFKFCLDNNKIKNFTVFPYKEHDQSYANDYYKILNFSVQNLRFTEPNIPKPIAIVLPKTLVQLQNSVACCREFSLEIRVRSGGHSYEGTSSVADDGTLFVIIDMMNLNHVWVNMETKIAWVEGGATLGETYYAISQASDAYGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLVDADGRVLERATMGEDVFWAIRGGGGGLWGIVYAWKIQLLKVPQVVTSFIASRTGTKNHIAKLVNKWQHVAPNLEDEFYLSCFVGAGLPEAKRIGLSTTFKGFYLGPMSKAISILNQDFPELDVVDEECREMSWIESVVFFSGLNDGASVSDLRNRYMQDKEYFKAKSDFVRSYVPLVGIKTALDILEKEPKGFVILDPYGGMMHNISSESIAFPHRKGNIFTIQYLIYWKEADNDKGSDYIDWIRGFYSSMTPFVSYGPRAAYINYMDFDLGVMELISFDDDLVKARVWGEKYFLSNYDRLVRAKTLIDPDNVFTNQQGILPMSFASSNAKELLSS* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2701 548 ProSiteProfiles PCMH-type FAD-binding domain profile. 77 253 IPR016166 GO:0071949
Mtr1g2701 548 Pfam Berberine and berberine like 474 532 IPR012951 GO:0016491|GO:0050660
Mtr1g2701 548 PANTHER FAD-BINDING BERBERINE FAMILY PROTEIN 16 539 - -
Mtr1g2701 548 SUPERFAMILY FAD-binding/transporter-associated domain-like 59 254 IPR036318 GO:0050660
Mtr1g2701 548 Gene3D - 142 534 IPR016169 -
Mtr1g2701 548 Gene3D - 31 137 IPR016167 -
Mtr1g2701 548 Gene3D - 256 470 - -
Mtr1g2701 548 PANTHER OS08G0158400 PROTEIN 16 539 - -
Mtr1g2701 548 Pfam FAD binding domain 81 220 IPR006094 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2701 Mtr-Chr1 38162818 38164943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2701 31 532 Miscellaneous Gene Families AT1G30760 40.792 7.57e-127 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2701 - - gmx:100790761 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2701 1 38162818 38164943 Mtr1g2701 1 38162818 38164943 ECH