Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2169 ATGCTTAGATCCTTCGTTAGAAAAATACAAAAGGGACTCACACAAACTGTTCAAAAAAGCCACTTGAATGAAGATGTTAGAGAAGGATATTTTGCAGTGGTTGCAATCAAAGATGGAGAAATGAAAAGGTTTATGATTGGGTTAGAGTATTTGAGTGATCCTGCATTTTTGGGATTACTTGATCAAGCTAGGGAAGAGTATGGTTTTAGACAGCAAGGAATTCTTGCAGTCCCTTGTGGGCCTCAAGAATTACAAAACATTCTAGATAGCTTAAACCAGAAGAGCATCAAATGGTGCAGGAGTAATTAG 309 0.3754 MLRSFVRKIQKGLTQTVQKSHLNEDVREGYFAVVAIKDGEMKRFMIGLEYLSDPAFLGLLDQAREEYGFRQQGILAVPCGPQELQNILDSLNQKSIKWCRSN* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2169 102 Pfam Auxin responsive protein 15 91 IPR003676 GO:0009733
Mtr1g2169 102 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 1 97 IPR003676 GO:0009733
Mtr1g2169 102 PANTHER SMALL AUXIN-UP RNA-RELATED 1 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2169 Mtr-Chr1 31860951 31861259 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2169 26 95 Calmodulin-binding Proteins AT2G24400 42.857 1.56e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2169 - K14488 mtr:MTR_1g063330 130.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3111 7 48049838 48050651 Mtr1g2169 1 31860951 31861259 PCT