LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g2089	ATGCCTTCCAGTCACTTGCTTCTCGAGGAACCAATTAGGATGGCTTCCATCCTAGAACCATCAAAAGCCAGCTTTTTTTCTGCAATGACAAAGATTGTTGGAACATTGGGTCCTAAATCTCGATCTGTTGAGACTATTTCTGGATGTCTTAAAGCTGGCATGTCTGTGGCTCGTTTTGATTTTTCATGGTGTGATCCTGAGTATCATCAGGAAACTTTGGAGAATTTGAAGACTGCTATTAAGGGTACTAAGAAGCTATGTGCTGTTATGCTGGATACAGTGGGTGCAGAGATGCAGGTTGTTAACAAAAGTGAGACAACTATCTCACTTGAGATAGATGCTCAGGTTGTTCTAACCCCCAACCAGGGACAAGAAGCTTCTTCAGAGATATTGCCAATCAACTTTGATGGACTGGCCCAGGCAGTGAAGACGGGAGACACTATTTTTATTGGTCAATACTTGTTCACAGGAAGTGAAACTACTTCTGTATGGCTTGAGGTATCTGAAGTCAAAGGGAACGATGTTGTGTGTATTATAAAGAATTCAGCTACATTGACCGGGTCATTGTTCACTTTGCATGCCTCTCAAATTCACATTGATCTACCTACCCTTACGGAGAAAGACAAGGAGGTTATAAGCACCTGGGGAGTTAAAAACAAAATTGATTTTCTGTCATTGTCATATACTAGGCATGCTAAAGATGTCCGCGAGGCTCGGGACTTCCTTTCAAAGTTAGGCGATCTTAGCCAGACACAAATTTTTGCGAAGATTGAAAATGTTGAGGGATTGACCCATTTTGATGAGATTCTGCAAGAAGCTGATGGTATTATTCTTTCTCGTGGAAATTTGGGCATTGATCTTCCACCAGAGAAGGTTTTTCTATTTCAAAAATCTGCCCTACACAAGTGTAATATGGCTGGGAAACCTGCTGTGCTTACACGTGTTGTGGACAGTATGACTGATAACTTAAGACCAACTCGTGCTGAAGCCACTGATGTTGCCAATGCTGTTCTAGATGGAAGTGATGCAATTCTTCTGGGTGCCGAGACTTTACGTGGATTGTACCCTGTTGAGACTATTTCTACTGTTGGTAGGATTTGTTCAGAGGCTGAGAAAGTTTTCAATCAAGACCTTTATTTTAAGAGGACAGTCAAATATGTTGGAGAACCCATGACCCACTTGGAATCTATTGCATCCTCTGCGGTACGGGCTGCTATTAAGGTGAAGGCTTCCATTATAATTTGCTTCACTTCATCTGGAAGGGCTGCAAGATTGATTGCAAAGTATAGGCCGACAATGCCTGTTCTCTCTGTGGTGATCCCCCGACTTAAGACAAATCAGCTAAAGTGGAGCTTCAGTGGAGCTTTTGAGGCAAGGCAATCACTTATTGTAAGAGGTCTCTTTCCCATGCTTGCTGATCCTCGTCATCCTGCTGAGTCTGAGACAACAACTGCATCAAATGAATCTATTCTTAAGGTTGCCCTTGATCATGGAAAAGCATTGGGAGTTATAAAGTCACACGACCGTGTTGTTGTTTGTCAGAAACTCGGCGATGCATCAGTGGTTAAGATTATTGAGCTTGAAGATTAA	1590	0.4233	MPSSHLLLEEPIRMASILEPSKASFFSAMTKIVGTLGPKSRSVETISGCLKAGMSVARFDFSWCDPEYHQETLENLKTAIKGTKKLCAVMLDTVGAEMQVVNKSETTISLEIDAQVVLTPNQGQEASSEILPINFDGLAQAVKTGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVVCIIKNSATLTGSLFTLHASQIHIDLPTLTEKDKEVISTWGVKNKIDFLSLSYTRHAKDVREARDFLSKLGDLSQTQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKSALHKCNMAGKPAVLTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISTVGRICSEAEKVFNQDLYFKRTVKYVGEPMTHLESIASSAVRAAIKVKASIIICFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPMLADPRHPAESETTTASNESILKVALDHGKALGVIKSHDRVVVCQKLGDASVVKIIELED*	530

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g2089	529	Pfam	Pyruvate kinase, barrel domain	30	375	IPR015793	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Mtr1g2089	529	TIGRFAM	pyruv_kin: pyruvate kinase	30	519	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Mtr1g2089	529	SUPERFAMILY	PK C-terminal domain-like	358	517	IPR036918	-
	Mtr1g2089	529	SUPERFAMILY	Phosphoenolpyruvate/pyruvate domain	8	375	IPR015813	GO:0003824
	Mtr1g2089	529	PRINTS	Pyruvate kinase family signature	85	101	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Mtr1g2089	529	PRINTS	Pyruvate kinase family signature	221	235	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Mtr1g2089	529	PRINTS	Pyruvate kinase family signature	253	279	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Mtr1g2089	529	PRINTS	Pyruvate kinase family signature	280	304	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Mtr1g2089	529	PRINTS	Pyruvate kinase family signature	329	347	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Mtr1g2089	529	PRINTS	Pyruvate kinase family signature	348	364	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Mtr1g2089	529	PANTHER	PYRUVATE KINASE	3	529	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Mtr1g2089	529	SUPERFAMILY	PK beta-barrel domain-like	103	186	IPR011037	-
	Mtr1g2089	529	PANTHER	PYRUVATE KINASE	3	529	-	-
	Mtr1g2089	529	Pfam	Pyruvate kinase, alpha/beta domain	395	524	IPR015795	-
	Mtr1g2089	529	Gene3D	-	97	201	IPR015806	GO:0004743\|GO:0006096
	Mtr1g2089	529	Gene3D	-	30	362	IPR040442	-
	Mtr1g2089	529	Gene3D	-	363	527	IPR036918	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g2089	Mtr-Chr1	30854207	30860105	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr1g2089	K00873		-	gmx:100801466	973.385

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr1g3380	1	45009775	45015389	Mtr1g2089	1	30854207	30860105	ECH
	Mtr1g2089	1	30854207	30860105	Mtr1g2089	1	30854207	30860105	ECH
	Mtr7g3179	7	48780083	48788196	Mtr1g2089	1	30854207	30860105	PCT