Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1117 ATGGATGTTGTTTTGGCCTCTTCATCTGTTGACGATGGGATAGGTTGTTGGGACCTTCATACAGGTGCTGAGCAGCTACGTTACAATTCATGTTCTTCACCTTTCCATGGCCTTGTCTCTCTCGGTTCTCGCTTTCTTGCTTCTTCTCAGCTTCATCACCCTTCTTCTGCTTCTCTTTTCTTCTGGTCCTTCTCCAAGCCTCAAGTTGAAGTTAAGAGCTTTCCTGCTGAAGCTATTAAGCCCCTTGCTGCTAATCACCAAGGCACCTATCTGGTCGGTGGAGCTTTGTCTGGTGATATATATTTGTGGGAGGTTGAAACTGGTAGATTGCTTAAGAAATGGCATGCTCATTTAAGGGCCGTCACTTGCCTGGTATTTTCTGATGATGACTCACTGCTGATATCTGGTTCTGAAGATGGATATGTAAGAGTTTGGTCGCTTTTCAGTTTATTTGATGATTTGAGAAGCCGGGAAGAAAAGAATCTCTACGAGTATAGTTTTTCGGAGCACACCATGCGTGTAACTGATGTTGTGATTGGTAATGGAGGGTGCAATGCAATTATAGTTTCAGCATCAGACGATCGGACTTGTAAGGTATGGAGCTTATCGAGGGGAACACTGCTAAGAAGTATAGTTTTCCCTTCAGTAATTAATGCCATTGTATTGGATCCAGCTGAACATGTGTTTTATGCCGGGAGTAGTGATGGAAAAATATTTATTGCTGCACTTAACACTGAAAGAATCACTACTATTGATAATTATGGGATGCATATCATTGGTTCATTTTCTAATCACAGCAAGGCAGTTACTTGCTTAGCATATAGCAAAGGTCGGAATTTGTTAATTTCTGGGTCTGAGGATGGAATAGTTCGTGTTTGGAATGCTAAAACTCACAACATTGTCCGCATGTTTAAACATGCTAAAGGACCTATAACTAATATTATTGTTGTTAGACAAGAAATTGACCCAAGCAATCATACATCTTCTAATTTACAAGCAGCCACAAAGAAACATGGGTCTTATTTACTCCCTCCATTAGAAAAATATGCAAATTCAACAGATTCAGATTTAAAGACTGCTATCAACCTAGGTGGTATCAGGGGATGCATGGATGTTTCATACAACAGTTCTAATTTGATATCTAATCACATTAAGGAGCTTCAGCAACAAGGTTCAGCCACCGCTTCTGAAATCGAGATGGAGAAACTAAAGCATGAGTACCAAAGGACAATGGAGATGGCTAACCAATGGAAGAAAATGTATGAGAACTTGCACGAATTTGGTATAAAGGAGCTATTGGATGGTGGCCAAACATGA 1317 0.4039 MDVVLASSSVDDGIGCWDLHTGAEQLRYNSCSSPFHGLVSLGSRFLASSQLHHPSSASLFFWSFSKPQVEVKSFPAEAIKPLAANHQGTYLVGGALSGDIYLWEVETGRLLKKWHAHLRAVTCLVFSDDDSLLISGSEDGYVRVWSLFSLFDDLRSREEKNLYEYSFSEHTMRVTDVVIGNGGCNAIIVSASDDRTCKVWSLSRGTLLRSIVFPSVINAIVLDPAEHVFYAGSSDGKIFIAALNTERITTIDNYGMHIIGSFSNHSKAVTCLAYSKGRNLLISGSEDGIVRVWNAKTHNIVRMFKHAKGPITNIIVVRQEIDPSNHTSSNLQAATKKHGSYLLPPLEKYANSTDSDLKTAINLGGIRGCMDVSYNSSNLISNHIKELQQQGSATASEIEMEKLKHEYQRTMEMANQWKKMYENLHEFGIKELLDGGQT* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1117 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 297 - -
Mtr1g1117 438 ProSitePatterns Trp-Asp (WD) repeats signature. 281 295 IPR019775 -
Mtr1g1117 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 167 210 IPR001680 GO:0005515
Mtr1g1117 438 Pfam WD domain, G-beta repeat 109 146 IPR001680 GO:0005515
Mtr1g1117 438 Pfam WD domain, G-beta repeat 166 201 IPR001680 GO:0005515
Mtr1g1117 438 Pfam WD domain, G-beta repeat 259 294 IPR001680 GO:0005515
Mtr1g1117 438 SMART WD40_4 160 201 IPR001680 GO:0005515
Mtr1g1117 438 SMART WD40_4 255 294 IPR001680 GO:0005515
Mtr1g1117 438 SMART WD40_4 204 242 IPR001680 GO:0005515
Mtr1g1117 438 SMART WD40_4 67 104 IPR001680 GO:0005515
Mtr1g1117 438 SMART WD40_4 107 146 IPR001680 GO:0005515
Mtr1g1117 438 PANTHER WD-REPEAT PROTEIN 18 2 435 IPR045227 -
Mtr1g1117 438 PRINTS G protein beta WD-40 repeat signature 133 147 IPR020472 -
Mtr1g1117 438 PRINTS G protein beta WD-40 repeat signature 188 202 IPR020472 -
Mtr1g1117 438 PRINTS G protein beta WD-40 repeat signature 281 295 IPR020472 -
Mtr1g1117 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 303 IPR001680 GO:0005515
Mtr1g1117 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 114 147 - -
Mtr1g1117 438 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 5 311 IPR011047 -
Mtr1g1117 438 Coils Coil 400 420 - -
Mtr1g1117 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 114 147 IPR001680 GO:0005515
Mtr1g1117 438 Gene3D - 1 213 IPR015943 GO:0005515
Mtr1g1117 438 Gene3D - 214 340 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1117 Mtr-Chr1 12746269 12751273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1117 111 314 Miscellaneous Gene Families AT5G08390 24.155 1.36e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1117 K14829 - gmx:100791195 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1117 1 12746269 12751273 Mtr1g1117 1 12746269 12751273 ECH