Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1004 ATGGGTTTCCGATCCCTCTTCCATCGAAAGAAGAAACTCCAAAATACAACATCGTCTTCCCCAACAGAGGTAACCACAAACACAACCTTTCTCTCTCGAACCACGTCCCTCCAATCACGTGTCCAATTCACCGAGGATTTGGAACACGTGTTTCGGAAATTTGATGTTAACGGTGATGGCAAAATCTCTTCTTCCGAATTAGGGTCCATCATGGGAAGCCTAGGGCAACCCGCAACGGAAGAAGAACTTGATAATATGATCCGTGAGGTTGATGCTGACGGTGATGGTCACATCAACCTCGAGGAGTTTATTGAGTTGAACACCAAAGACATTGATCCCAATGAGATTTTGGAGAATCTCAAAGATGCATTTTCCGTTTTTGACATTGACAAAAATGGTTCTATTTCGGCCGAGGAGTTGCACAATGTTATGGTGAGTCTTGGAGATCAATGCTCCCTTGCCGAGTGTCAAAAGATGATAGGCGGGGTTGATAGCGATGGTGATGGAATGATCGATTTTGAAGAGTTTAAGAAGATGATGATGGGCTCCAACTTTGGATCGATGGAAGGAACTAATCAAGTTGACAGCGAAACATGA 597 0.4405 MGFRSLFHRKKKLQNTTSSSPTEVTTNTTFLSRTTSLQSRVQFTEDLEHVFRKFDVNGDGKISSSELGSIMGSLGQPATEEELDNMIREVDADGDGHINLEEFIELNTKDIDPNEILENLKDAFSVFDIDKNGSISAEELHNVMVSLGDQCSLAECQKMIGGVDSDGDGMIDFEEFKKMMMGSNFGSMEGTNQVDSET* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1004 198 Pfam EF-hand domain pair 45 105 IPR002048 GO:0005509
Mtr1g1004 198 Pfam EF-hand domain pair 118 180 IPR002048 GO:0005509
Mtr1g1004 198 ProSitePatterns EF-hand calcium-binding domain. 164 176 IPR018247 -
Mtr1g1004 198 ProSitePatterns EF-hand calcium-binding domain. 91 103 IPR018247 -
Mtr1g1004 198 SUPERFAMILY EF-hand 44 182 IPR011992 -
Mtr1g1004 198 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Mtr1g1004 198 PANTHER CALCIUM BINDING PROTEIN 23 192 - -
Mtr1g1004 198 SMART efh_1 155 183 IPR002048 GO:0005509
Mtr1g1004 198 SMART efh_1 119 147 IPR002048 GO:0005509
Mtr1g1004 198 SMART efh_1 82 110 IPR002048 GO:0005509
Mtr1g1004 198 SMART efh_1 46 74 IPR002048 GO:0005509
Mtr1g1004 198 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Mtr1g1004 198 ProSiteProfiles EF-hand calcium-binding domain profile. 151 186 IPR002048 GO:0005509
Mtr1g1004 198 ProSiteProfiles EF-hand calcium-binding domain profile. 78 113 IPR002048 GO:0005509
Mtr1g1004 198 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Mtr1g1004 198 CDD EFh 120 181 IPR002048 GO:0005509
Mtr1g1004 198 Gene3D - 5 109 - -
Mtr1g1004 198 Gene3D - 110 193 - -
Mtr1g1004 198 ProSitePatterns EF-hand calcium-binding domain. 128 140 IPR018247 -
Mtr1g1004 198 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 23 192 - -
Mtr1g1004 198 CDD EFh 46 106 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1004 Mtr-Chr1 11474127 11474941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1004 10 183 EF-hand Containing Proteins AT1G24620 62.286 3.56e-71 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1004 K13448 - oeu:111396559 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1004 1 11474127 11474941 Mtr1g1004 1 11474127 11474941 ECH