LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g0885	ATGATGATTACTACTACTAGCTGTGGCGGTAGTGAAAATTTTGTGAAAGAAGTGAAGATGATGATGACAGTGAGAGAGTGGAAGGATATTCCAGTTGAACTTTTGATGCAAATTTTGTCACTTTTGGATGATCAAATGGTGATTACAGCTTCTCATGTTTGTCATGGTTGGAGAGATTCCATTTCTTTTGCTCTCACTCGTTTATCACTCTCATGGTGTAGGAAGAACATGAATAACTTGGTCCTATCTCTTGCTCCTAAGTTCACAAAATTGCAAACTCTAATCCTTCGTCAAGACACGCCACAACTAGAAGACAATGCTGTCGAGGCTGTTGCACAATTCTGTCGTGACCTGCAGATCCTGGACCTCAGCAAAAGTTTCAAACTTACCGATCGTTCTCTGTATGCAATAGCCCTTGGTTGTTCTGATCTTACAAAACTCAACATAAGTGGTTGTTCATCCTTTAGCGACAAAGCTCTTTCTTACCTAGCAAGTTTATGCAGAAAGCTGAAAATTTTGAATCTATGTGGTTGTGTTAAAGCTGTATCAGATACTGCATTACAGGCAATTGGACATCACTGCAATCAGTTACAGTCTTTGAATCTTGGATGGTGCGAACAAGTCAGCGATGTTGGAGTGATGAGTTTAGCATATGGATGTCCTGATCTTAGAACACTTGACTTATGTGGTTGTGTCCTTATAACAGATGACAGTGTAATTGCCTTGGCGGATAGGTGTCCTCATCTAAAGTCCCTTGGACTGTACTACTGCAAAAACATAACAGACAGAGCAATGTACTCATTGGCACAAAGCAAAGTGAATAATAAGATGTGGGGATCTGTGAACGAAGAGGATGGACTTAAGACTTTGAACATTAGCCAGTGTACATCGCTCACTCCATCTGCTGTTCAGGCTGTCTGTGACTCATCCCCTGCACTTCACACCTGCTCAGGAAGACATTCACTCATTATCAGTGGCTGTCTTAATCTTACATCTGTGCATTGTGCTTGTTGTGTCCGGCCACACCGAGCTATAAACGCTTTTCCTCACTCAGCTCATTGA	1062	0.4171	MMITTTSCGGSENFVKEVKMMMTVREWKDIPVELLMQILSLLDDQMVITASHVCHGWRDSISFALTRLSLSWCRKNMNNLVLSLAPKFTKLQTLILRQDTPQLEDNAVEAVAQFCRDLQILDLSKSFKLTDRSLYAIALGCSDLTKLNISGCSSFSDKALSYLASLCRKLKILNLCGCVKAVSDTALQAIGHHCNQLQSLNLGWCEQVSDVGVMSLAYGCPDLRTLDLCGCVLITDDSVIALADRCPHLKSLGLYYCKNITDRAMYSLAQSKVNNKMWGSVNEEDGLKTLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIISGCLNLTSVHCACCVRPHRAINAFPHSAH*	354

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g0885	353	SUPERFAMILY	RNI-like	63	334	-	-
	Mtr1g0885	353	Gene3D	Ribonuclease Inhibitor	21	284	IPR032675	-
	Mtr1g0885	353	SUPERFAMILY	F-box domain	17	61	IPR036047	GO:0005515
	Mtr1g0885	353	SMART	LRR_CC_2	220	245	IPR006553	-
	Mtr1g0885	353	SMART	LRR_CC_2	284	309	IPR006553	-
	Mtr1g0885	353	SMART	LRR_CC_2	62	87	IPR006553	-
	Mtr1g0885	353	SMART	LRR_CC_2	246	271	IPR006553	-
	Mtr1g0885	353	SMART	LRR_CC_2	167	193	IPR006553	-
	Mtr1g0885	353	SMART	LRR_CC_2	194	219	IPR006553	-
	Mtr1g0885	353	SMART	LRR_CC_2	115	140	IPR006553	-
	Mtr1g0885	353	SMART	LRR_CC_2	141	166	IPR006553	-
	Mtr1g0885	353	SMART	LRR_CC_2	88	114	IPR006553	-
	Mtr1g0885	353	PANTHER	F-BOX SKP2A-LIKE PROTEIN	18	335	-	-
	Mtr1g0885	353	Pfam	F-box-like	28	61	IPR001810	GO:0005515
	Mtr1g0885	353	Pfam	Leucine Rich repeat	141	164	IPR001611	GO:0005515
	Mtr1g0885	353	Pfam	Leucine Rich repeat	246	269	IPR001611	GO:0005515
	Mtr1g0885	353	Pfam	Leucine Rich repeat	193	217	IPR001611	GO:0005515
	Mtr1g0885	353	Pfam	Leucine Rich repeat	220	243	IPR001611	GO:0005515
	Mtr1g0885	353	PANTHER	UNCHARACTERIZED	18	335	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g0885	Mtr-Chr1	10198125	10200671	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr1g0885	K03875		-	gmx:100793275	577.785

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr1g0885	1	10198125	10200671	Mtr1g0885	1	10198125	10200671	ECH