Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0788 ATGGCGAAACATTCACTCGACGAAGAAACAACCAAGAAAGTTATTCGACAGGTTGAGTTTTATTTCAGTGATAGTAATCTTCCCAGAGATGATTTCTTGAGTAAAACTGTCAATGAAAGTGAAGATGGAATGGTTAGTTTGGCTTTGCTTTGTTCCTTCAATCGGATGCGAAAGCATCTTAAGTTGGCTGATGATACTAAGCCCGCTGATGTTAAGGAAGAAACTGTCAAAGCTGTTGCTGAAGTTTTGAAAAATGCTGCTTCACTCAAGCTATCGGAAGATGGGAGCAAAGTTGGCAGGATTACTGAACTTCCCAAGCCAGAAGAGGTAATTGAGCAGGTTGAGATAAGAACGATTGCTGCATCACCATTTGAATATACTGTGAAGCTTGAAGAAGTGGAGTCCTTCTTTGGTCAATATGCCAAGGTCAACAGTGTTCGGTTGCCCCGTCATGTTGGAGACAAAAAGTTCTTCTGTGGTACTGCCCTTGTTGAGTTCTCATCAGATGAAGAAATGCAAAATGTTTTGAAGCAAAAATTAGTGTATGCAGGCGCTGAGCTAGAATTAAAGCCAAAGCAGGACTTTGACGCAGAAAGAGAAAAGGAATTAGAAAAGCATGAAAAATCTCGTAAAAATGTGGGTTCAAACCACGAAGAGGATAACACCAATACAGAAGAAGACTACCCTAAAGGCTTAGTTATTGCCTTCAAACTAAAGAGCAGTTCAGATGAAGTTCCAGAAAAGAATAGCACTGATCAACAAGCCAATGACAATAATGATGTCACCAAGACAGATGAACAAAAACCCTCTGAAGTTGCTGCTGAGGAAAGTGATCAAAAGATGTCAGAAAATGATGACAATGATAAAGAGAACAATGGAGTGAACGAAGGAAAGGAGGCTGAAGGCGAAGAAAAGGAGCAAGAGAAAAATGGGGTGAAGGAAGAAAAGGAGACCGAAGTTGAAGAAAAGGGCCAAGAAAACAATGGGGCAGGTGAAGGAAAGGTGACTGAAGGTGTCGAAAAGGGCCAGGAAACTGGGAAAAAAACAGCTGTTATTTTCAAGAACGACTCAGATGTTGTCTTACGTGAAGATTTGAAGGTTGTCTTTCAGAAGTTTGGTGATGTTAAGTACATAGATTTCAATATGGGAGATGAGTCAGGATTCATTCGGTTTGATGAACCTGAAGCTGCTCAGAAAGCACGTGCTGCTGCAGCTCTTTCGGAAAAGGGGGGCTTAGTTGTGAAGAATTATATTGCTACTCTAGATCCAGTGACAGGTGAAGCTGAAAAACAATACTGGAGCCAGCTTCGTGGTAAACAAGATATACGCAGAGAAAGTTTCAGCAACCGAGGAAGGGGAGGAGGAAGGTATGGTAGAGGAGGCAAATTTTCACGTAATAGAGACAATGATTCTGGAAGAGGTCGCCAAAATAAATATAGAAAGTATTAA 1449 0.4106 MAKHSLDEETTKKVIRQVEFYFSDSNLPRDDFLSKTVNESEDGMVSLALLCSFNRMRKHLKLADDTKPADVKEETVKAVAEVLKNAASLKLSEDGSKVGRITELPKPEEVIEQVEIRTIAASPFEYTVKLEEVESFFGQYAKVNSVRLPRHVGDKKFFCGTALVEFSSDEEMQNVLKQKLVYAGAELELKPKQDFDAEREKELEKHEKSRKNVGSNHEEDNTNTEEDYPKGLVIAFKLKSSSDEVPEKNSTDQQANDNNDVTKTDEQKPSEVAAEESDQKMSENDDNDKENNGVNEGKEAEGEEKEQEKNGVKEEKETEVEEKGQENNGAGEGKVTEGVEKGQETGKKTAVIFKNDSDVVLREDLKVVFQKFGDVKYIDFNMGDESGFIRFDEPEAAQKARAAAALSEKGGLVVKNYIATLDPVTGEAEKQYWSQLRGKQDIRRESFSNRGRGGGRYGRGGKFSRNRDNDSGRGRQNKYRKY* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0788 482 MobiDBLite consensus disorder prediction 259 328 - -
Mtr1g0788 482 Pfam La domain 14 84 IPR006630 -
Mtr1g0788 482 Gene3D - 107 201 IPR012677 -
Mtr1g0788 482 Gene3D - 336 452 IPR012677 -
Mtr1g0788 482 MobiDBLite consensus disorder prediction 443 482 - -
Mtr1g0788 482 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mtr1g0788 482 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mtr1g0788 482 PRINTS Lupus La protein signature 158 176 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mtr1g0788 482 Coils Coil 295 315 - -
Mtr1g0788 482 MobiDBLite consensus disorder prediction 193 226 - -
Mtr1g0788 482 Gene3D - 2 105 IPR036388 -
Mtr1g0788 482 MobiDBLite consensus disorder prediction 241 345 - -
Mtr1g0788 482 SUPERFAMILY RNA-binding domain, RBD 117 410 IPR035979 GO:0003676
Mtr1g0788 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 178 IPR000504 GO:0003723
Mtr1g0788 482 SMART la 8 101 IPR006630 -
Mtr1g0788 482 ProSiteProfiles La-type HTH domain profile. 4 108 IPR006630 -
Mtr1g0788 482 PANTHER OS02G0610400 PROTEIN 4 481 - -
Mtr1g0788 482 PANTHER LUPUS LA PROTEIN-RELATED 4 481 IPR045180 -
Mtr1g0788 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 202 IPR000504 GO:0003723
Mtr1g0788 482 ProSiteProfiles xRRM domain profile. 344 470 IPR014886 GO:0003723
Mtr1g0788 482 MobiDBLite consensus disorder prediction 461 476 - -
Mtr1g0788 482 SMART rrm1_1 350 422 IPR000504 GO:0003723
Mtr1g0788 482 SMART rrm1_1 118 190 IPR000504 GO:0003723
Mtr1g0788 482 SUPERFAMILY "Winged helix" DNA-binding domain 7 107 IPR036390 -
Mtr1g0788 482 CDD LA_like_plant 10 100 - -
Mtr1g0788 482 MobiDBLite consensus disorder prediction 193 229 - -
Mtr1g0788 482 Pfam RNA binding motif 356 452 IPR014886 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0788 Mtr-Chr1 8899794 8905378 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0788 K11090 - gmx:100803099 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0788 1 8899794 8905378 Mtr1g0788 1 8899794 8905378 ECH