Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0613 ATGCCATTCTCATCAGTCCCAGCTCGTCTCACACTCCTCGCTCTCTTCTCCGCCACAACCTTCTACTTCTTCTACAAATCCCGCCGCTTACGAAACCTAAAACAACTAACCCTAAACTCCCAAAACCCTAACACTAACCCTAAAATTCTCTTCATTTCTCAAACCAACACTTCCAAAACCCTCGCTAACCATCTCCACCGTTTCCTCACCTCAAACAACCTCGCATTCGACATCATCGATGGCAGAAACTACGAACCCGAAGATCTCCCTAAGGAAACGCTTCTCCTTATCGTTGCTTCCACTTGGGAAGACGGTAAACCACCGCCGGAGTATAAATTCTTCGCTGATTGGCTTGCGGAGAGTTCGGAGGATTTTAGAGTTGGTTCGTTGATTTTGTCGAAGTGTAGATTCGCGGTTTTTGGTGTCGGTAGTGGAGGTTATGGTGATAATTTCAATGCTGTTGGTAAGGAGATTGTGAAACGGATGAAGGCTTTGGGTGGTAATGAGATGATTCCGTTGGGGGAAGGAGATGTTAATGGTGGTGAGGTGGATGAGGTTTTTGAGAAGTGGTGTGGGAAGGTTGTTGGAATGCTGAAAGGTGTTGACGATGGTGGTGGTGATTTGGAGAATGGGGAGGAGGAAAGTGGTGCTTTGAGTTCCGATGAAGAGGAGTCTGACGAGGAGGAAGAGGCGGAGTCGGAGATTGTTGATCTAGAAGATATTGCAGGTAAAGCTCCTTCAAGGAAGTTGGTGGCTACAGTGAAGGAGAGTAATGGGAGGTTGAATGGAAAGAAAGAAATGGTGACTCCTGTTATTAGAGCAAATTTGGTGAAGCAGGGTTATAAGATTATTGGTTCACACAGTGGTGTCAAGATTTGTAGATGGACTAAGTCACAGCTTCGAGGTCGAGGTGGTTGCTACAAGCATTCATTTTACGGAATTGAGAGTCATAGGTGCATGGAGGCAACCCCTAGCTTGGCATGTGCAAATAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTAGCGAAAAGTTGGGTGTGGGAGATGGACGATCCAATAGAGATCGTAAATTCTGCAATAGATCAGCATACAAATATGATTAAACAAATGAAAGGAGTTCCTGGAGTCACCTCGGAGCGATTAACTGAAGGCATGACACCACGGCATTGTGCATTATCTCTTGTTGGTGAACCTATTATGTATCCAGAGATAAACACACTTGTGGATGAGTTGCACAAAAGGAGGATTTCCACTTTTCTAGTTACAAATGCACAATTTCCTGATAAAATTAAGTTGCTGAAGCCTATCACCCAGTTATATGTCAGTGTAGATGCCGGAACAAAGGACTCTCTTAAGGCAATCGATAGACCACTCTTTGGAGATTTCTGGGAAAGATTTATTGATTCCTTGACTGCTCTGAAGGAAAAACACCAGCGCACTGTATACCGCCTGACCCTGGTGAAAGGATGGAATGCTGAAGAAATTGATGCTTATTATAAACTCTTCAGTATTGGAGAACCCGACTTCATTGAAATCAAGGGTGTTACATATTGTGGCTCGACTGCTACATCAAAATTAACAATGGAAAATGTCCCTTGGCATGCCGACGTGAAAGCTTTCTCGGAGGCTCTGTCTCTGAAAAGCCAAGGGGAGTATGAAGTTGCATGTGAGCATGTTCACTCGTGTTGTATCCTCTTGGCAAAAACTAAGAAGTTCAAAATTGATGGCCAGTGGTATACATGGATAGACTATGATAAATTTCATGATCTGGTGGCTTCTGGAAGTACTTTTGACAGCAAAGATTACATGGCTGCCACACCATCCTGGGCCGTCTATGGAGCTGAGGAAGGTGGATTTGATCCAGGACAGTTGAGATATAGGAAAGAGAGACATCACAAGTCGAACCGCAAAGAATCAGGTTAG 1929 0.4432 MPFSSVPARLTLLALFSATTFYFFYKSRRLRNLKQLTLNSQNPNTNPKILFISQTNTSKTLANHLHRFLTSNNLAFDIIDGRNYEPEDLPKETLLLIVASTWEDGKPPPEYKFFADWLAESSEDFRVGSLILSKCRFAVFGVGSGGYGDNFNAVGKEIVKRMKALGGNEMIPLGEGDVNGGEVDEVFEKWCGKVVGMLKGVDDGGGDLENGEEESGALSSDEEESDEEEEAESEIVDLEDIAGKAPSRKLVATVKESNGRLNGKKEMVTPVIRANLVKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVAKSWVWEMDDPIEIVNSAIDQHTNMIKQMKGVPGVTSERLTEGMTPRHCALSLVGEPIMYPEINTLVDELHKRRISTFLVTNAQFPDKIKLLKPITQLYVSVDAGTKDSLKAIDRPLFGDFWERFIDSLTALKEKHQRTVYRLTLVKGWNAEEIDAYYKLFSIGEPDFIEIKGVTYCGSTATSKLTMENVPWHADVKAFSEALSLKSQGEYEVACEHVHSCCILLAKTKKFKIDGQWYTWIDYDKFHDLVASGSTFDSKDYMAATPSWAVYGAEEGGFDPGQLRYRKERHHKSNRKESG* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0613 642 Pfam Wyosine base formation 507 570 IPR013917 -
Mtr1g0613 642 SUPERFAMILY Radical SAM enzymes 325 505 - -
Mtr1g0613 642 Gene3D - 20 203 IPR029039 -
Mtr1g0613 642 MobiDBLite consensus disorder prediction 207 234 - -
Mtr1g0613 642 Gene3D Aldolase class I 249 582 IPR013785 -
Mtr1g0613 642 CDD Radical_SAM 324 524 - -
Mtr1g0613 642 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 3 637 IPR034556 GO:0008033|GO:0051539
Mtr1g0613 642 SFLD tRNA wybutosine-synthesizing 264 574 IPR034556 GO:0008033|GO:0051539
Mtr1g0613 642 Pfam Flavodoxin 49 190 IPR008254 GO:0010181
Mtr1g0613 642 SFLD tRNA wybutosine-synthesizing 264 574 - -
Mtr1g0613 642 MobiDBLite consensus disorder prediction 618 642 - -
Mtr1g0613 642 ProSiteProfiles Radical SAM core domain profile. 312 555 IPR007197 GO:0003824|GO:0051536
Mtr1g0613 642 PRINTS Flavodoxin signature 48 61 IPR001094 GO:0010181
Mtr1g0613 642 PRINTS Flavodoxin signature 96 107 IPR001094 GO:0010181
Mtr1g0613 642 PRINTS Flavodoxin signature 134 144 IPR001094 GO:0010181
Mtr1g0613 642 PRINTS Flavodoxin signature 159 178 IPR001094 GO:0010181
Mtr1g0613 642 Pfam Radical SAM superfamily 324 503 IPR007197 GO:0003824|GO:0051536
Mtr1g0613 642 ProSiteProfiles Flavodoxin-like domain profile. 47 195 IPR008254 GO:0010181
Mtr1g0613 642 SUPERFAMILY Flavoproteins 45 198 IPR029039 -
Mtr1g0613 642 Coils Coil 221 241 - -
Mtr1g0613 642 MobiDBLite consensus disorder prediction 202 234 - -
Mtr1g0613 642 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 3 637 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0613 K15449 - gmx:100791920 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0613 1 7018832 7026368 Mtr1g0613 1 7018832 7026368 ECH