Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0516 ATGCCTGTGTTTATCCCATCTGACAAACCAAAGAGGGTGTCTATGGACCAAATCAACTTCGAAAGGAACATTATCGAAAAATTAGAAAAGGCGGATATCAATAACGATGGTCGTTACACAAAGAAGGAACTCAAAAAAGCTCTAAAGGATTTAGGTTCTTACTACCCTGGATGGAGAGCCAATCGTTGTTTGATGAAAGCTGATGCCAATAAAGACGGACTAATCAGTGGCGAGGAAATCGACACTTTAGTTGATTATCTCCTCACTCGTGGTTTTGGCAAGAACTAA 288 0.4028 MPVFIPSDKPKRVSMDQINFERNIIEKLEKADINNDGRYTKKELKKALKDLGSYYPGWRANRCLMKADANKDGLISGEEIDTLVDYLLTRGFGKN* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0516 95 Pfam EF hand 26 46 IPR002048 GO:0005509
Mtr1g0516 95 Pfam EF hand 64 84 IPR002048 GO:0005509
Mtr1g0516 95 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 22 86 - -
Mtr1g0516 95 PANTHER - 22 86 - -
Mtr1g0516 95 ProSiteProfiles EF-hand calcium-binding domain profile. 19 54 IPR002048 GO:0005509
Mtr1g0516 95 ProSitePatterns EF-hand calcium-binding domain. 68 80 IPR018247 -
Mtr1g0516 95 SUPERFAMILY EF-hand 22 84 IPR011992 -
Mtr1g0516 95 Gene3D - 28 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0516 Mtr-Chr1 6006087 6006679 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0516 32 83 EF-hand Containing Proteins AT2G43290 42.308 4.99e-07 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0516 - - mtr:MTR_1g019660 178.333