Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0476 ATGGTTCCAATTCAAACACAGTCTCAGTACTCTATTGGATGGCAAGATACTATGGCGTTCTTTATTGCTACATTTACCATTTATTTGTGTGTTTCAACTAGTATTTTATATGGATTCTATGGCGACGCTCGTTTGATTCTTGGTCCAAGCTCATCGCGTTTGATACAATCACGTTCGTTTTTTGTGGACCAAATTGAAGTGACAAATGAGTATACCAATGCTAATAATGATATTCATCTTTATGCTTTCAATGAGAAACCAGAGTTAAATTCCGAAATAAATTGGACTACATCGAAGTTTTTAGTTGTTGAAGCATATAGTCGCAAGGGAATTTCTTTGTGGTTAAATGAAGGCTCCACTATTTGTTTGAGGTGGGAAGCAGAAGCTAGCAGTTTAAATAAGCTTGAGGGGATAGTGATTAAAGGAGAAAAAAGGTTTGAAAAACTAGAGCCTAACAATGGTAAACGAGCTGAATACATTGTCGAGGAAGATGATAGGTACCAAATTGGGATTCTAAACATGAATGCAAGGAACATAATCTTGACTTTGCATATCAATGTTTCTGCAAAGATATATGATACTACGAAAGCCACGAATAAGTGCTCTACTCGGAATGGATCGTGCAAACTCGACCTTTTTTTCCCTATCACATATTATTTAGTTCTAACAGCGCCAAAAAATGGAAATGATGATGATGATGCATGGTTTGTTGAAATTTCTTTTATGGCTCGTGTTTTTTCATACATAATCCTTTTAGGAGTTTTCATGATTGTGATTTTTATGATATTGAAATGCCTTGGAGCTGATTATGGTGAAATTCACAATGTCGCTGAAGCGCAAGAAGTAACTGAAACCGAACCTCTGATGCAGCCTAATCCAGTGACATATGGAACAAACATTTTTCATGAAAAGGAAGAAACAAATTCAGATGTATCAGAGGAGTTATATGATGAAAAGTTATGCATAATTTGTTTTGATGAACAACGCAACTGTTTCTTTGTTCCTTGCGGTCATTGTGCCACTTGCTATGACTGTGCACAAAGGATTATGGATGAGGAGAGCAACTCTACTTTGACGGATCAAATTGCTAACCCTAAGAGCAAAGTTTGTCCTGTATGCCGGAGAGTTATTAATAAAGTAAAAAGATTATTCTAG 1155 0.361 MVPIQTQSQYSIGWQDTMAFFIATFTIYLCVSTSILYGFYGDARLILGPSSSRLIQSRSFFVDQIEVTNEYTNANNDIHLYAFNEKPELNSEINWTTSKFLVVEAYSRKGISLWLNEGSTICLRWEAEASSLNKLEGIVIKGEKRFEKLEPNNGKRAEYIVEEDDRYQIGILNMNARNIILTLHINVSAKIYDTTKATNKCSTRNGSCKLDLFFPITYYLVLTAPKNGNDDDDAWFVEISFMARVFSYIILLGVFMIVIFMILKCLGADYGEIHNVAEAQEVTETEPLMQPNPVTYGTNIFHEKEETNSDVSEELYDEKLCIICFDEQRNCFFVPCGHCATCYDCAQRIMDEESNSTLTDQIANPKSKVCPVCRRVINKVKRLF* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0476 384 Pfam Domain of unknown function (DUF4792) 79 146 IPR032008 -
Mtr1g0476 384 ProSiteProfiles Zinc finger RING-type profile. 321 374 IPR001841 -
Mtr1g0476 384 PANTHER OS05G0521000 PROTEIN 10 384 IPR044586 GO:0004842
Mtr1g0476 384 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 384 - -
Mtr1g0476 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 384 IPR013083 -
Mtr1g0476 384 SUPERFAMILY RING/U-box 308 380 - -
Mtr1g0476 384 Pfam Zinc finger, C3HC4 type (RING finger) 318 380 - -
Mtr1g0476 384 Pfam Domain of unknown function (DUF4793) 157 262 IPR032010 -
Mtr1g0476 384 SMART ring_2 321 373 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0476 Mtr-Chr1 5477678 5480266 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0476 - - cam:101496542 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0476 1 5477678 5480266 Mtr1g0476 1 5477678 5480266 ECH