Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0403 ATGGCCGACGAATCGCAATACGACTCAACTCCACCTTCCTTGAAACGCAAGTACGACGAACAACCACCGCCTCACTCACGAACCACCGGTTTCTCCGACGGACCTCCTCCTCCTTCTTACAACAACGTCCCCCCTCCCGCCACCGCTGATTTCGAACTCATCAAACAACGCGCTCAACAAGTAGCAGCTCGTCTCCTCTCCGGCGCCGCAGCTCCCTCTGATGTCGTCAAACGTACCAAATTCGACAACGGTCCTCCTTCCCCTTACGATTCCTCAGATTTGAAGAGTCAATATGCAGCTCCTATGAGTATACCTTCGTATTCACATCAAGGGTCAAGCAAGAAGATTGAAATCCCTAATGGAAGGGTTGGTGTTATTATTGGAAAAGGTGGAGAAACTATCAAGTATCTTCAGTTGCAATCTGGTGCAAAAATCCAAGTTACCCGTGATATGGATGCTGATCCTAATTCTCCAAATAGATTGGTTGAGCTTACTGGTACTTCTGATGCTATTGCTACTGCTGAGAAACTCATCAAAGAAGTTCTTGCTGAGGCTGAATCCGGAGGTAATGGACTTGTTACTCGACGAATGACTGGGCAGGGTGGCGCTGATGAGTTTTCCATGAAGATTCCAAATAACAAGGTCGGTCTTATAATCGGTAAAGGGGGAGAAACGATAAAGAGTATGCAAGCTACAACTGGAGCAAGAATTCAGGTGATTCCTCTTCATCTTCCCCCAGGCGACACATCCACTGAAAGAACACTAAAAATTGAAGGGACCTCTGAACAAATTGAATCTGCAAAACAATTGGTTGATTCAATCCTCAGTGGCGAGAATCGTCTTAGAAATCCATCAATGTCCGGTGGTTACTCTCAGCAAGGTTACCAAGCTCGGCCACCCTCTAGCTGGGCTCCCCCTGCCGCTTCTCAACAACCTGGTTATGGCTATGCACAACCTGGAGCATACCCTGGTCCAACACCTCAGTACAATGTGCCTCAGCAAGCTTATGCAGGTTATCCTCCCCATTCAGCTGGTGGATATTCTACCAATTGGGACCAGTCCACTGCAACTACCCAACAGTCTACCTATGATTATTATAATCAACAGCCTCAACAACCGCAGAATCCTGGTGGTCCTGCACCTCCAGCTGATGGGACTGCTTACAATTACAGCCAACCACCTTCCGCTGGTTATAACCAACCGGGACAGGGATATTCTCAGGATGGCTATGGTGCATATCAACAACCTCCACAATCAGGATATGCTCAGCCAACATCATATGATCAGCAGCAAGGCTATGGGTCAGCTCAAGAGGGCCAAACTACCACCAACTATGGATCACAAGGACAAGGGGATGCAACCCAAGTTCCACCTGTCCAACCTTCCCAACAAGGTTATGGCAGCAGCCAACAGCCTAGCCCAAACGCTGCTAAGTATCCACCACAAGGGGCTGCTCAGCCAAGTTATGGGGTACCACCAACCTCCCAAACTGCATATGGCAGTCAACCTCAAACACAGTCTGGTTATGGACCCCCTCAAACTCAAAAGCCAAGTGGTACTCCACCTGCATACGGTCAATCACAGTCACCTAATGCTGCTGGAGGCTATGGTCAGCCGGGGTATCCTCCTTCCCAGCCCCCTCCTTCTGGATATTCCCAACCGGGGTATCCTCCTTCCCAGCCCCCTCCTTCTGGATATTCCCAACCTGGTTATGGTCAGGCACCACAATCATACAACAGTGGTTCCTATGGTGCTGGTTATCCTCAGGCCCCAGCATATTCTGCTGATGGTAATGCAAGTGGGAATGCCCGTGGTGGCAGCTATGATGGAGCACCTGCACAGGGAGCTCAGCAGGCTAGTGTTGCTAAGTCACCTCAGAGCTGA 1884 0.4968 MADESQYDSTPPSLKRKYDEQPPPHSRTTGFSDGPPPPSYNNVPPPATADFELIKQRAQQVAARLLSGAAAPSDVVKRTKFDNGPPSPYDSSDLKSQYAAPMSIPSYSHQGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVELTGTSDAIATAEKLIKEVLAEAESGGNGLVTRRMTGQGGADEFSMKIPNNKVGLIIGKGGETIKSMQATTGARIQVIPLHLPPGDTSTERTLKIEGTSEQIESAKQLVDSILSGENRLRNPSMSGGYSQQGYQARPPSSWAPPAASQQPGYGYAQPGAYPGPTPQYNVPQQAYAGYPPHSAGGYSTNWDQSTATTQQSTYDYYNQQPQQPQNPGGPAPPADGTAYNYSQPPSAGYNQPGQGYSQDGYGAYQQPPQSGYAQPTSYDQQQGYGSAQEGQTTTNYGSQGQGDATQVPPVQPSQQGYGSSQQPSPNAAKYPPQGAAQPSYGVPPTSQTAYGSQPQTQSGYGPPQTQKPSGTPPAYGQSQSPNAAGGYGQPGYPPSQPPPSGYSQPGYPPSQPPPSGYSQPGYGQAPQSYNSGSYGAGYPQAPAYSADGNASGNARGGSYDGAPAQGAQQASVAKSPQS* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0403 627 SMART kh_6 110 183 IPR004087 GO:0003676
Mtr1g0403 627 SMART kh_6 202 276 IPR004087 GO:0003676
Mtr1g0403 627 MobiDBLite consensus disorder prediction 566 584 - -
Mtr1g0403 627 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 58 566 - -
Mtr1g0403 627 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 573 621 - -
Mtr1g0403 627 MobiDBLite consensus disorder prediction 540 565 - -
Mtr1g0403 627 Gene3D K Homology domain, type 1 105 200 IPR036612 GO:0003723
Mtr1g0403 627 Gene3D K Homology domain, type 1 201 300 IPR036612 GO:0003723
Mtr1g0403 627 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 206 339 IPR036612 GO:0003723
Mtr1g0403 627 CDD KH-I 205 271 - -
Mtr1g0403 627 MobiDBLite consensus disorder prediction 1 50 - -
Mtr1g0403 627 MobiDBLite consensus disorder prediction 279 308 - -
Mtr1g0403 627 CDD KH-I 113 179 - -
Mtr1g0403 627 MobiDBLite consensus disorder prediction 388 477 - -
Mtr1g0403 627 MobiDBLite consensus disorder prediction 613 627 - -
Mtr1g0403 627 MobiDBLite consensus disorder prediction 366 627 - -
Mtr1g0403 627 ProSiteProfiles Type-1 KH domain profile. 203 271 - -
Mtr1g0403 627 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 114 190 IPR036612 GO:0003723
Mtr1g0403 627 MobiDBLite consensus disorder prediction 65 95 - -
Mtr1g0403 627 ProSiteProfiles Type-1 KH domain profile. 111 178 - -
Mtr1g0403 627 MobiDBLite consensus disorder prediction 488 534 - -
Mtr1g0403 627 Pfam KH domain 114 180 IPR004088 GO:0003723
Mtr1g0403 627 Pfam KH domain 207 272 IPR004088 GO:0003723
Mtr1g0403 627 MobiDBLite consensus disorder prediction 279 341 - -
Mtr1g0403 627 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 58 566 - -
Mtr1g0403 627 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 573 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0403 Mtr-Chr1 4519380 4526271 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0403 K13210 - gmx:100813135 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0403 1 4519380 4526271 Mtr1g0403 1 4519380 4526271 ECH