Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0392 ATGCCTACTCATTCCCCTGATGTATCTACAGGAATAGGGGAGTGTTTCTATGCAGCTTTGATGCCACTCATAGCTGTCTTTGAGGTTTTGGTCTTTGCTGTCACAGTTACTGTTAATGAAGTTGAAGCATTGCATGAGCTATTTAAAAAGATAAGTAGCTCTGTAATTGATGATGGCTTGATTCACAAGGTGGAGCTTCAATTAGCTCTATTTCAAACCCCAAATGGAGAAAATCTTTTTCTGGATCGAGTTTTTGATATTTTTGATGAAAAGAGAAACGGTGTTATCGAGTTTGATGAATTTGTCCACGCCCTCAGTGTTTTCCATCCTTACGCCCCTATGGATGAAAAAATAGATTTTGCATTTAAGCTCTACGACCTGAGACAAACAGGGTTTATTGAGCCAGAGGAAGTGAAGCAAATGGTTATAGCTATTTTGATGGAATCTGAAATGAATCTTTCTGATGATCTTCTTGAAGCTATTGTTGACAAGACAATTGCCGACGTTGATCAAGACAATGATGGTAAAATCAGTAAAGAAGATTGGAAATTTTTTGTGAGTCGAAATCCGTCTCTCTTGAAGAACATGACACTTCCTTATTTGAAGGATATCACCACTGCGTTTCCTAGTTTTATTTTCAAATCAGAAGCTGGAAATTGA 660 0.3758 MPTHSPDVSTGIGECFYAALMPLIAVFEVLVFAVTVTVNEVEALHELFKKISSSVIDDGLIHKVELQLALFQTPNGENLFLDRVFDIFDEKRNGVIEFDEFVHALSVFHPYAPMDEKIDFAFKLYDLRQTGFIEPEEVKQMVIAILMESEMNLSDDLLEAIVDKTIADVDQDNDGKISKEDWKFFVSRNPSLLKNMTLPYLKDITTAFPSFIFKSEAGN* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0392 219 CDD EFh 117 187 IPR002048 GO:0005509
Mtr1g0392 219 Gene3D - 28 219 - -
Mtr1g0392 219 CDD EFh 81 142 IPR002048 GO:0005509
Mtr1g0392 219 PANTHER CALCINEURIN B-LIKE PROTEIN 10 37 217 - -
Mtr1g0392 219 SUPERFAMILY EF-hand 30 211 IPR011992 -
Mtr1g0392 219 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
Mtr1g0392 219 Pfam EF-hand domain pair 84 102 IPR002048 GO:0005509
Mtr1g0392 219 Pfam EF-hand domain pair 116 182 IPR002048 GO:0005509
Mtr1g0392 219 PANTHER CALCINEURIN B 37 217 IPR045198 GO:0005509|GO:0019722|GO:0019900
Mtr1g0392 219 ProSitePatterns EF-hand calcium-binding domain. 170 182 IPR018247 -
Mtr1g0392 219 ProSiteProfiles EF-hand calcium-binding domain profile. 157 192 IPR002048 GO:0005509
Mtr1g0392 219 PRINTS Recoverin family signature 84 105 - -
Mtr1g0392 219 PRINTS Recoverin family signature 131 149 - -
Mtr1g0392 219 PRINTS Recoverin family signature 177 197 - -
Mtr1g0392 219 SMART efh_1 80 108 IPR002048 GO:0005509
Mtr1g0392 219 SMART efh_1 117 145 IPR002048 GO:0005509
Mtr1g0392 219 SMART efh_1 161 189 IPR002048 GO:0005509
Mtr1g0392 219 ProSiteProfiles EF-hand calcium-binding domain profile. 113 148 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0392 Mtr-Chr1 4424530 4430436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0392 33 216 EF-hand Containing Proteins AT5G24270 66.848 4.85e-87 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0392 K06268 - gmx:100810494 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0392 1 4424530 4430436 Mtr1g0392 1 4424530 4430436 ECH