Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0344 ATGATAGCTTACCTTGAACACTTCGTTCATGGAAACGACACAGAATCACCACCAAACGACGACGTTTCATCTCTCCAATCTTCTTTCCATTTCGCCCCAAATTCCATCGCTAGTAAAGACTTCGGCGGCATGAAATCCTCCACTCCCCTCGCCGTACTCCGCCCTTACACCACCGCTGATGTTGTAAAAGCCGTTAAAGCAGCAGCAACCACCACAAATTTAACAGTGGCGGCGCGTGGTAACGGTCACTCCATCAACGGCCAAGCCATGGCGGAGAAAGGACTCGTCCTCGACATGCGAGCCACGGCGGCGGAGCCTTTTCAACTTCTCTACGTCGACGGCGTTCCACACGTCGACGTTTCCGGTGGGGCATTATGGGAAGAAGTGTTGAAACGCTGCGTTTCGAATTTTCAGCTTGTTCCGAGGTCGTGGACGGATTATCTTGGGTTGACGGTTGGTGGAACGTTATCTAACGCCGGTGTTAGTGGTCAGACTTTCCGTTATGGTCCTCAAACGGCAAACGTAACGGAATTGGAAGTTGTTACTGGTAAAGGTGATAGTTTTGTTTGTAATGATAATCAAAATTCTGATCTTTTTTTTGCTTCACTTGGTGGTCTTGGTCAGTTTGGTGTCATCACTAGAGCCAGAATCGTTCTTCAACAAGCGCCCGATATGGTGAGGTGGATAAGGGTAATTTACTCGGAATTTGAGGACTATACTAGAGATGCAGAGTGGCTGGTGACTCTACCAGAAGGTGACGGTTTTGATTACGTGGAAGGGTTCGTTGTGGCTAACAATGATGACCCATGTAATGGTTGGCCCACAATTCCGATGGGTTCGAACCAAATTTTCAACCCGGTTTGTCTTCCTTCTTCAGCTGGACCGGTTCTCTATTGCTTAGAGCTTGCTCTTCATTATCGAAAAACCGCTCGATCTTCTGAAGTTAATACGAAAGTGGATAGATTGCTTGGAGGGTTGAGATTTGTTGAGGGAATAAAATTTGAGGATGATGTGAAGTACATGGATTTTTTGCTACGTGTAAAGCGTGTGGAAGAGGATGCTAAAGCCAAAGGTATATGGGATGCACCTCACCCATGGTTGAACATGTTTGTGTCCAAGTCCGACATTGCTGATTTTGATCGTGAAGTGTTCAAGAAAATCCTCAAACATGGGGTTGGTGGTCCCATTCTAGTGTATCCACTATTACGAAGCAAGTGGGATGATAGACACTCGGTAGTGGTGCCAGACAGCAACATTTTCTACATAATAGCATTACTCCGATTTATTCCACCACCACCTAAGGGACCACCTACTGATAAATTGGTGGCACAAAACAATGCAATTATTCAATTGTGCTACAACAAGGGATTTAATTTCAAGTTATATCTTCCTCACTACACGTCTCAGGAGAATTGGATGCGACACTTTGGGGATAGGTGGACTAGATTTGTCCAGAGAAAACAAAATTTTGATCCAATGGCTATTCTTGCACCTGGACAAAAAATATTTTCAAGAAACCAACTTAAATAA 1530 0.4497 MIAYLEHFVHGNDTESPPNDDVSSLQSSFHFAPNSIASKDFGGMKSSTPLAVLRPYTTADVVKAVKAAATTTNLTVAARGNGHSINGQAMAEKGLVLDMRATAAEPFQLLYVDGVPHVDVSGGALWEEVLKRCVSNFQLVPRSWTDYLGLTVGGTLSNAGVSGQTFRYGPQTANVTELEVVTGKGDSFVCNDNQNSDLFFASLGGLGQFGVITRARIVLQQAPDMVRWIRVIYSEFEDYTRDAEWLVTLPEGDGFDYVEGFVVANNDDPCNGWPTIPMGSNQIFNPVCLPSSAGPVLYCLELALHYRKTARSSEVNTKVDRLLGGLRFVEGIKFEDDVKYMDFLLRVKRVEEDAKAKGIWDAPHPWLNMFVSKSDIADFDREVFKKILKHGVGGPILVYPLLRSKWDDRHSVVVPDSNIFYIIALLRFIPPPPKGPPTDKLVAQNNAIIQLCYNKGFNFKLYLPHYTSQENWMRHFGDRWTRFVQRKQNFDPMAILAPGQKIFSRNQLK* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0344 509 PANTHER CYTOKININ DEHYDROGENASE 7 30 507 - -
Mtr1g0344 509 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 223 503 IPR015345 GO:0009690|GO:0019139|GO:0050660
Mtr1g0344 509 PANTHER GULONOLACTONE OXIDASE 30 507 - -
Mtr1g0344 509 SUPERFAMILY FAD-binding/transporter-associated domain-like 36 219 IPR036318 GO:0050660
Mtr1g0344 509 Gene3D - 226 462 IPR016170 -
Mtr1g0344 509 SUPERFAMILY FAD-linked oxidases, C-terminal domain 223 503 IPR016164 GO:0003824|GO:0050660
Mtr1g0344 509 Gene3D - 99 224 IPR016169 -
Mtr1g0344 509 Pfam FAD binding domain 49 190 IPR006094 GO:0050660
Mtr1g0344 509 Gene3D - 37 504 IPR016167 -
Mtr1g0344 509 ProSiteProfiles PCMH-type FAD-binding domain profile. 45 222 IPR016166 GO:0071949
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0344 Mtr-Chr1 3905950 3911418 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0344 K00279 - gmx:100783374 818.535