Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0340 ATGGCTTCAGCTTCTGTTTCAATGTCTTTACCACTAACCCAAGCAACTCACAAAAACCTTCACAATTCTTCCTCCACACCCTTCTTGAAACCATTGCCCTTTCCACAAGCAAAGAAGACACTAGTCAACAAGTCAACTTCAAAATCCAATGTTGTTGGAATTCAAGCATCATTGAAAGACAAAACAGTGAAGGGTCTAACAGCTTTTGCATTAACAGCCTCTATGGTGTTACCAGATGTTGCTCATGCAGCTGGAAATGATTTTTCACCATCTCTTAAAAACTTTTTGCTTAGCATTGCTGCTGGTGGTGTTGTTCTTACAGCTATATTGGGTGCTGTTGTTGGTGTTTCCAACTTTGATCCTGTTAAGAGAACTTAA 378 0.3968 MASASVSMSLPLTQATHKNLHNSSSTPFLKPLPFPQAKKTLVNKSTSKSNVVGIQASLKDKTVKGLTAFALTASMVLPDVAHAAGNDFSPSLKNFLLSIAAGGVVLTAILGAVVGVSNFDPVKRT* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0340 125 Gene3D Single helix bin 88 125 - -
Mtr1g0340 125 PANTHER OS07G0673550 PROTEIN 2 125 - -
Mtr1g0340 125 Pfam Photosystem II reaction centre X protein (PsbX) 89 124 IPR009518 GO:0009523|GO:0015979|GO:0016020
Mtr1g0340 125 Coils Coil 124 125 - -
Mtr1g0340 125 PANTHER OS07G0673550 PROTEIN 2 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0340 Mtr-Chr1 3829635 3830379 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0340 - - mtr:MTR_1g015290 240.35