Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0276 ATGATGTTTCAAAGAAACCCTTTACACACAAACCCTGAACCATGCAACCATCTTTCAGATTACAAGCTTAAACATGGTTTCAATGGCTACAAAGCCATTCAAAAGCTACTTGTAACTTCTCCAATTGGTAGAACTAGTTTGAAAAAACCAAATTTAAGAATACTCAGATGCAGTTTTTGTAATGGGTGTGAAAAGAGGGTTTTTTTATGTTTGATTTGTTCTTCATTCTGTTGTTTGGATCATACCCTTTTGCATATTCAAACTGAAAATGGTCATGATTTGTTTGTTGATGTAGAAAGGTGTGAACTTTACTGTGGGGTGTGTTGTGATCAAATTTATGACCCTGATTTTGATCAATTTGTTATGGCTAAACATTCAATGGTTTTGCCAAATGGTGTTGTTGGAAATGAGAGTATTGGTCAGAGGTTGATTAAGAGAAGGAGATTGGTTTCTGGGGTTGGATTGTATTTGCAAAATGAATCTAAGTTTAGATTTGAAACCAAAGATCTGAGGGGAAAATCTTGTTTTCCTGAAGGTTTGAGGGGCTTGAACAGTTTAGGTAGTACTTGTTTTATGAATTCTGTGTTGCAAGCATTGCTACATGCACCTCCATTCAGGGACTATTTCTTGAGTGGTGGACATAGTTTGGAAGATTGTAAAAGAAGAACGACGGAACGGTTGTGTTTGATTTGTGATATCAATACTGTTTTTTCAGCTATGTATTCCGGTGATCGAAATCCTTATAGCCCTGCTCAGTTTCTCTACAGCTGGTGGCAGCATTCAGCAAATTTAGCGAGTTACGAACAGCAGGATGCTCACGAGTTTTTCATTTCAATGTTAGATGCAATTCATGAGAAAGAGGGCATAACAAAGAATGGAAGCAAAGGCAATGGTGGTGACTGTCAATGCATTGCTCATAGAGTGTTCTATGGACAATTGAGATCAGAAGTTACATGTATGGCCTGTGGATTCACCTCAACAACCTATGACCCTTTTTTGGACATTTCACTTAATCTCGATATCAATATATCTTTGACCGAAAAGGGTAAAAAACTTACCAAACAAAATGCGGATGACAACATGTCGACACTTCTCGGTTGTTTGGATTTGTTCACTCGGCCAGAGAAGCTAGGGTCAGATCAGAAACTTTACTGCCAAAATTGTAAGGAGAGGCAGAATGCATTGAAACAAATGTCTATTAGTAAACTCCCTTTGGTACTTACTTTGCATGTAAAACGATTTGAGCATTCTTTCGTTAAGAAGTTATCGAGAAAGATTGACCGCTACCTACAATTTCCATTCTCCTTGGACATGACTCCATATTTGTCCTCTTCTATCCTCAGAGCCAAATATGGAAATCGAATTTTTAATTTTGGAGGCGATGAATCAGATACATTTTCCAAGTTCGAGATATTCGCAGTGGTGACACATTCGGGGACGCTCGAGTCTGGCCATTATGTTACTTTTGTACGGTTAAGGAAGCAATGGTATCGATGTGACGATGCTTGGATAACGAAGGTTGATGAGGCAACGGTAAGAGCTTCACAATGTTATATGATCTTCTATGTTCAGAAGACTTTGTACAATAAAGCAAATGAAGATTTGAGCCACCTTCCAAATTCACCTGGAAGAGAGATTTTGATTCCTATCGCTGGTTGTTGCTAG 1665 0.3832 MMFQRNPLHTNPEPCNHLSDYKLKHGFNGYKAIQKLLVTSPIGRTSLKKPNLRILRCSFCNGCEKRVFLCLICSSFCCLDHTLLHIQTENGHDLFVDVERCELYCGVCCDQIYDPDFDQFVMAKHSMVLPNGVVGNESIGQRLIKRRRLVSGVGLYLQNESKFRFETKDLRGKSCFPEGLRGLNSLGSTCFMNSVLQALLHAPPFRDYFLSGGHSLEDCKRRTTERLCLICDINTVFSAMYSGDRNPYSPAQFLYSWWQHSANLASYEQQDAHEFFISMLDAIHEKEGITKNGSKGNGGDCQCIAHRVFYGQLRSEVTCMACGFTSTTYDPFLDISLNLDINISLTEKGKKLTKQNADDNMSTLLGCLDLFTRPEKLGSDQKLYCQNCKERQNALKQMSISKLPLVLTLHVKRFEHSFVKKLSRKIDRYLQFPFSLDMTPYLSSSILRAKYGNRIFNFGGDESDTFSKFEIFAVVTHSGTLESGHYVTFVRLRKQWYRCDDAWITKVDEATVRASQCYMIFYVQKTLYNKANEDLSHLPNSPGREILIPIAGCC* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0276 554 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 181 525 IPR028889 -
Mtr1g0276 554 ProSiteProfiles Zinc finger UBP-type profile. 37 131 IPR001607 GO:0008270
Mtr1g0276 554 SUPERFAMILY Cysteine proteinases 178 524 IPR038765 -
Mtr1g0276 554 Pfam Zn-finger in ubiquitin-hydrolases and other protein 57 116 IPR001607 GO:0008270
Mtr1g0276 554 SUPERFAMILY RING/U-box 14 119 - -
Mtr1g0276 554 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 7 550 - -
Mtr1g0276 554 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 182 197 IPR018200 GO:0004843|GO:0006511
Mtr1g0276 554 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7 550 - -
Mtr1g0276 554 Gene3D Cysteine proteinases 175 530 - -
Mtr1g0276 554 Pfam Ubiquitin carboxyl-terminal hydrolase 182 522 IPR001394 GO:0004843|GO:0016579
Mtr1g0276 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 129 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0276 Mtr-Chr1 3087382 3091163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0276 182 522 Miscellaneous Gene Families AT2G24640 30.571 3.14e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0276 K11366 - gmx:100806347 937.947