Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0263 ATGGCCGTCCAAAAAATCATAATAACACCAATTTTAGTTTTTCTAGTGACCATTTTCTTCAATGTATCATCATCATCTTCTTCTAATAATTCGCAATACCAATTTTTAAACCATGGTGTTAGATCAGCATATTGGCCAGCAGGTGATGATTTTTCACCTTCTTTGATTGACACAAACTACTTCACACACATTTTATTGGCCTTCATTCAACCAGAACCAATTTCCTTCAAACTTGAAATCACAAAATCCGGCATAAAATGGGGCCAGAATTTCATCAAGGCACTCCGCCACCGTTCCCCGCCGGTGAAAACACTTTTATCAATCGGAGGTGGCGGTAGCAATTCAACACTCTTCTCTGAAATTGCTAGCACAAAACAAAATAGAGAAATCTTTATAAATTCAACAATCGAGGTGGCAAGAAAATATAGGTTTGATGGTGTTGACTTGGATTGGGAATTTCCTGAAACTCAACAAGACATGTTTAACCTTGGTTTGTTGTACGAGGAATGGTATAATGCTTTGTTTGCTGAAGCTAAGGTTAGGAGAAAACCACGTTTGCTTTTGACTTCAGCTGTTTACTACAATTCCACTGTTAGGCTTATCGGTAAACATGGGCCGAGATCGTACCCGACCCAAGCTATCAATAAATACTTGGACTGGGCCAGTCCAATGTGTTTCGATTATCACGGTACGTGGGATAATAATACCGACTTTAATGCTGCTTTGTATGACTCGAAGTCCGAAATTAGTACCAATTTTGGACTCCACTCGTGGATCAAATCGGGTGTTCGACCTGAAAAGTTGGTTATGGGTTTGGCTTTATATGGACGGGCGTGGGAGCTTAAGGATCCAAATGTCAACGGGGTGGGAGCGGAGGCGGTGGGGCCTGCAACTGACACGGATGGTAGTATGAATTATAATGAGATTTTGAAATTTAACAAACAGAGTGGTGCTAATGTTGTGTATGATAAGGTTGCTATATCTTTTTATTCTTATGCGGGTACGACTTGGATCGGGTATGATGATGGGCCATCCATAACGACTAAGGTTCGGTTCGCTAAGTCTTTGGGCTTAAAGGGCTATTTCTTTTGGGCCCTTGGGAAGGACAAGGATTGGAGCATCTCAAAACAAGCTTCAAATGCATGGGGACACTGA 1155 0.4139 MAVQKIIITPILVFLVTIFFNVSSSSSSNNSQYQFLNHGVRSAYWPAGDDFSPSLIDTNYFTHILLAFIQPEPISFKLEITKSGIKWGQNFIKALRHRSPPVKTLLSIGGGGSNSTLFSEIASTKQNREIFINSTIEVARKYRFDGVDLDWEFPETQQDMFNLGLLYEEWYNALFAEAKVRRKPRLLLTSAVYYNSTVRLIGKHGPRSYPTQAINKYLDWASPMCFDYHGTWDNNTDFNAALYDSKSEISTNFGLHSWIKSGVRPEKLVMGLALYGRAWELKDPNVNGVGAEAVGPATDTDGSMNYNEILKFNKQSGANVVYDKVAISFYSYAGTTWIGYDDGPSITTKVRFAKSLGLKGYFFWALGKDKDWSISKQASNAWGH* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0263 384 SUPERFAMILY Chitinase insertion domain 275 340 IPR029070 -
Mtr1g0263 384 Gene3D Glycosidases 55 370 - -
Mtr1g0263 384 SUPERFAMILY (Trans)glycosidases 41 382 IPR017853 -
Mtr1g0263 384 Gene3D - 274 340 IPR029070 -
Mtr1g0263 384 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 39 384 IPR001223 GO:0005975
Mtr1g0263 384 PANTHER CHITINASE 20 383 - -
Mtr1g0263 384 Pfam Glycosyl hydrolases family 18 44 369 IPR001223 GO:0005975
Mtr1g0263 384 CDD GH18_plant_chitinase_class_V 40 375 - -
Mtr1g0263 384 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Mtr1g0263 384 PANTHER CLASS V CHITINASE CHIT5A 20 383 - -
Mtr1g0263 384 SMART 2g34 39 369 IPR011583 GO:0008061
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0263 Mtr-Chr1 2918693 2920497 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0263 40 382 Glycoside Hydrolase AT4G19810 40.580 9.19e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0263 K01183 - gmx:100787511 533.102