Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0243 ATGGGGAAACCAGCTGGAAAAAAGAAGGAACATGAATCACCAAAATCAAACAACAAGAACAAAGGTTACGAACGTTCAACATCATTCGACGATGACACAGCCATGTTCATCAACATGTCACAAGAATTAAGAGAAGAAGGTAACAAACTTTTCTTCCAAAAAAAAGACAACGAAGGAGCTATGTTAAAGTACGAAAAAGCTCTCAAACTCTTACCCAAAAACCACATAGATGTTGCACATCTTCACACCAACATGGCCATGTGTTATATGCAATTGGGTCTCGGCGAATATCCTCGAGCTATTAACGAGTGCAATCTTGCTCTGCAAGTTTCGCCGAGGTATAGTAAAGCTCTTCTTAGAAGAGCTAAGTGTTACGAGGCGTTGAATCGATTGGATTTGGCTATGAGAGATGTTAGAGTTGTTTTGAATGCTGAGCCGAATAATTCAACCGCGTTGGAGATTCTTGATAGTTTGAGGATTACTATGGAGGAGAAAGGGATCGCTATTGATGAGACTGAGATTGCTCTGGCTGCTATTCAGCAAATAGAGCCGCCTGCTGCACGGTTTAGGAAAGTTGTTAGGGAGAAGATTAATAAGAAGAAGAAAGGGCATAAAGGGGAAGGCGAGGAAGAGAGGAAAAGTAAGAGTGTCGTTGAGAAGAAAGCTGCCAATGTTGGAAATGTTAACGTTAATGTTAAGGTGAAGGGTCAAGATTCGAAGGATAAGGTTATGGATAAGGATAAGGATAGTAAAGAAGTTGTTAAGGAAGATAAAGGGGTTACTAGGACTGTGAAGTTGATATATGGAGAGGATATTAGGTGGGCGCAGTTGCCGGTGAATTGTAGTATGAAGTTGGTGAGAGATGTGATAAGGGATAGGTTTCCGGGGTTAAAGGGTGTTCTTGTGAAGTATAAGGATAGGGAAGGTGATTTGGTTACTATTACTACTACTGCTGAGTTGAGGTTAGCTGAGGGTTGTCATGTGCTTGGTTCGATTCGGTTGTATATTACGCAGGTGGATTTGGATATGGAGCCGTGCTATGATGAAAAGACGAGTAGTGGTGAGGTGAGAGAGGAGAATGGGGTTGGAGAAGGAGATAAGGGTGTTGGGGGTAATAGGATGATTACTGTGGAGGAATGGCTTGTTCAGTTTGCGAGGCTGTTTAAGAACCATGTTGGGTTTGATTCTGATTCGTATCTGGATATTCATGAGGTTGGGATGAAGATATATTCGGAGGCGATGGAGGATTCGGTGACAAATGATGGTGCTCAAGAGCTGTTTGATATTGCTGCGGATAAGTTTCAAGAGATGGCTGCTTTGGCTTTGTTTAATTGGGGGAATGTTCACTTGTCTAAGGCGAGGAGGCGAGTGCCTTTTCAGGAAGACGGGACGAGAGAAGCGTCTCTCGAGCATCTTAAAGCTGGATATGAATGGGCTACGAAGGAGTACAAGGAAGCAGAAATGAGATACGAAGAATCTGTGAAAATCAAACCAGACTTCTACGAGGGACTCCTTGCTCTTGGGTATCAGCAGTTTGAGCAAGCAAAGCTATGCTGGTGTTATTTAATTGCAAACAATAAGAATATCGAAGTTGGTCCTTTTGAGGAGGTTCTGCAGCTCTATAACAAGGCAGAGGACAGCATGGAAAAAGGGATGTTGATGTGGGAGGAGATTGAGGAACAACGTTTGAATGGGCTCTCTAAGTTAGATAAATATAATGCAGAGTTAGAGAAAATGGGTTTGCACGGTCTTTTCAGGGACATTTCTTCTGAAGAAGCTGAAGAGCAGGCTTCAAATATGAGGATACAGATATACCTTTTATGGGGCACCTTATTGTACGAGCGTTCTGTTGTGGAATTTAAGCTAGGACTACCAACATGGGAGGAGTGTTTGGAGGTTGCTGTTGAAAAGTTTGAACTAGCTGGAGCTTCTACAACTGACATTGGTGTCATGATAAAGAACCATTGTTCTAATGAAACAGCAATGGAAGGGTTCAAAATTGATGACATAGTGCAAGCATGGAATGAGATGTATGATGGATGGCAGTTTGATGTTCCAACTTTCCGACTCGAACCATTGTTTCGTCGGCGTGTTCCAAGACTCCATTACATCCTGGAACAATTTTAA 2127 0.4241 MGKPAGKKKEHESPKSNNKNKGYERSTSFDDDTAMFINMSQELREEGNKLFFQKKDNEGAMLKYEKALKLLPKNHIDVAHLHTNMAMCYMQLGLGEYPRAINECNLALQVSPRYSKALLRRAKCYEALNRLDLAMRDVRVVLNAEPNNSTALEILDSLRITMEEKGIAIDETEIALAAIQQIEPPAARFRKVVREKINKKKKGHKGEGEEERKSKSVVEKKAANVGNVNVNVKVKGQDSKDKVMDKDKDSKEVVKEDKGVTRTVKLIYGEDIRWAQLPVNCSMKLVRDVIRDRFPGLKGVLVKYKDREGDLVTITTTAELRLAEGCHVLGSIRLYITQVDLDMEPCYDEKTSSGEVREENGVGEGDKGVGGNRMITVEEWLVQFARLFKNHVGFDSDSYLDIHEVGMKIYSEAMEDSVTNDGAQELFDIAADKFQEMAALALFNWGNVHLSKARRRVPFQEDGTREASLEHLKAGYEWATKEYKEAEMRYEESVKIKPDFYEGLLALGYQQFEQAKLCWCYLIANNKNIEVGPFEEVLQLYNKAEDSMEKGMLMWEEIEEQRLNGLSKLDKYNAELEKMGLHGLFRDISSEEAEEQASNMRIQIYLLWGTLLYERSVVEFKLGLPTWEECLEVAVEKFELAGASTTDIGVMIKNHCSNETAMEGFKIDDIVQAWNEMYDGWQFDVPTFRLEPLFRRRVPRLHYILEQF* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0243 708 PANTHER PROTEIN PHOX4 1 707 - -
Mtr1g0243 708 SUPERFAMILY CAD & PB1 domains 259 346 - -
Mtr1g0243 708 PANTHER PROTEIN CLMP1 1 707 IPR044517 -
Mtr1g0243 708 Gene3D - 253 338 - -
Mtr1g0243 708 SMART tpr_5 40 74 IPR019734 GO:0005515
Mtr1g0243 708 SMART tpr_5 115 148 IPR019734 GO:0005515
Mtr1g0243 708 SMART tpr_5 79 114 IPR019734 GO:0005515
Mtr1g0243 708 SMART tpr_5 467 500 IPR019734 GO:0005515
Mtr1g0243 708 CDD PB1 263 336 - -
Mtr1g0243 708 Pfam PB1 domain 261 337 IPR000270 GO:0005515
Mtr1g0243 708 SUPERFAMILY TPR-like 38 164 IPR011990 GO:0005515
Mtr1g0243 708 MobiDBLite consensus disorder prediction 1 27 - -
Mtr1g0243 708 Gene3D Tetratricopeptide repeat domain 28 167 IPR011990 GO:0005515
Mtr1g0243 708 MobiDBLite consensus disorder prediction 198 220 - -
Mtr1g0243 708 MobiDBLite consensus disorder prediction 202 219 - -
Mtr1g0243 708 SMART PB1_new 261 339 IPR000270 GO:0005515
Mtr1g0243 708 ProSiteProfiles PB1 domain profile. 261 339 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0243 Mtr-Chr1 2712424 2717001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0243 28 148 Calmodulin-binding Proteins AT3G25230 32.308 8.45e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0243 - - vra:106765155 987.252