Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0241 ATGTATAACTTCAACGAGGAGGTTCTGCTGTTCTTCCTGTTACACTGTTTTACAGAAGAAGGTTTAAAGGAAACAGTACACACGTTTGAGCGTGAAAGTGGGTTATACTTTGACTTTAAATATTTTGAGGAGGTGGTACTTACAGGCCGGTGGGATGAAGTTGAGAAATATCTTTCTGGATTTACAAAAGTTGAAGACAATAATCATTCAATTAAAATATACTTTGAATTGAGAAAACAAAGATACTTCGAGGCTTTAGACAGCAACGATCAAAGCAAGGCTATAGAAATCCTTACGAAGGATCTAAAAGTCTTCCGTTCAAGAAATGAGGAAGTATTTAAAGAATTGACTCAATTATTGACATATAACAACATAAGGGAACATGAATTACTTTCAACATATCAAGATGCAATTTCTTCAAGAAAGATTGTGATGAATGAAATTAAGGAAATCATAGAGCAACATCCTATGCTCAAAGGAAAATTGAAATTTCCTGATATTGATTGTCAGAGGCTAAAGCATCTTCTAAATGCAAGCTTAAATTGGCAGCATCAAAATAATGCTCCAGCTTCTCCAGAACATGGCCTCTTTATGAATCATGTCAATCATTTCATACCATCTACTGCTGCTGCAATAAATCAAGGAACAGCTTTGAATAATCTTGGGGTACCTAGTGAGAGTGGTAAAAATTTGGAGGACCTGCAACCTGATTTAATTGAAAAATCCCACAAAATATCAGAAAGTGTATTTCAGATTTGTACACCATCTCAATGCCATATGTTGCTACTTCCTAAACAGCCCGAAGAAAACAAGATCGTTAGACTCGCTTACACAAATTCGGGAAATGGCATTTTGGCATTGACATCAAATGGTAATCATCTACTTTGGTTATGGACACATACTAGCATTGATATGGGAGCCAAGGCAACAGCACAAGTTCATCCTCAATTGGCCAAAAATGGTTTGGAATTCATGAGCAATGACCTTACAAATGCCAATCGTGAAGATTTAGTTTCTTGTTTTGCTATATCAAAAGCAGATTCTTATCTCTTATCAACCTCAGGAGGGTTGGTTTCTTTGTTCAATATGGTATCATTTAAGACTCTAGTAACTTTCATGCCACCTCCACCAATGGTAACAAGTCTTGCCTTCTATCCTAAAGATAATAATACTTTTCTTATTGGCTTGGATGACTCCAGTATACGTGTATACAATATTCACAAGCATGATGAGGTTCAAAAGCTTGAGGGTCATTCTAAACGAGTTTCTGCTCTTGCCTTCTCAAATACTTTGAATATACTTGTTTCTGCTGATGCAAGCCCTCAGATTATTGTATGGGATAGCAGTAGCTGGGAAAAATTGAGAGAAAGAAACTTGCAAATAGATGGACCAAATGTGCCACAAATGTTTTCTGAAACTCACATTCAATTTCACCCTGATCAGCAAAATTTTCTTTTTGTACATAAAATTCATCTTGCAATTTATGAAGCAACAGAACTAAAATGTGTCAACCAGTGGGATTCAAATTTTCCAACAGTTATCTGCCAAGCAACATTCTCATCTAATGGTCAAATGGTGTATGCTTGTTTTCTTGATGGGAATTTGGCAATATTTGATGCATCAAATTTTCAAATGCATTATAACATTCAGCCTTCTGTTTACCACCTTTCATCAATTCCCAGTGTGAAAATCTACCCAACTGTTTTAGCTGCACATCCACAGAAACCAAACCAATTTGCAGTAGGGTTAACCGATGGTTGTGTTTATGTGTTTGAGCCAAAGGAACCATGTGGTAATTGGATCATGTCTCAAGTTGATAAGGAAAAAGCTAACAGCATAGGGAGTCAAGGTTGA 1854 0.363 MYNFNEEVLLFFLLHCFTEEGLKETVHTFERESGLYFDFKYFEEVVLTGRWDEVEKYLSGFTKVEDNNHSIKIYFELRKQRYFEALDSNDQSKAIEILTKDLKVFRSRNEEVFKELTQLLTYNNIREHELLSTYQDAISSRKIVMNEIKEIIEQHPMLKGKLKFPDIDCQRLKHLLNASLNWQHQNNAPASPEHGLFMNHVNHFIPSTAAAINQGTALNNLGVPSESGKNLEDLQPDLIEKSHKISESVFQICTPSQCHMLLLPKQPEENKIVRLAYTNSGNGILALTSNGNHLLWLWTHTSIDMGAKATAQVHPQLAKNGLEFMSNDLTNANREDLVSCFAISKADSYLLSTSGGLVSLFNMVSFKTLVTFMPPPPMVTSLAFYPKDNNTFLIGLDDSSIRVYNIHKHDEVQKLEGHSKRVSALAFSNTLNILVSADASPQIIVWDSSSWEKLRERNLQIDGPNVPQMFSETHIQFHPDQQNFLFVHKIHLAIYEATELKCVNQWDSNFPTVICQATFSSNGQMVYACFLDGNLAIFDASNFQMHYNIQPSVYHLSSIPSVKIYPTVLAAHPQKPNQFAVGLTDGCVYVFEPKEPCGNWIMSQVDKEKANSIGSQG* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0241 617 SMART ctlh 35 93 IPR006595 -
Mtr1g0241 617 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 36 93 IPR006595 -
Mtr1g0241 617 SMART WD40_4 552 592 IPR001680 GO:0005515
Mtr1g0241 617 SMART WD40_4 499 539 IPR001680 GO:0005515
Mtr1g0241 617 SMART WD40_4 326 362 IPR001680 GO:0005515
Mtr1g0241 617 SMART WD40_4 408 447 IPR001680 GO:0005515
Mtr1g0241 617 SMART WD40_4 365 405 IPR001680 GO:0005515
Mtr1g0241 617 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 456 IPR001680 GO:0005515
Mtr1g0241 617 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 617 IPR027728 GO:0006355
Mtr1g0241 617 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Mtr1g0241 617 SUPERFAMILY WD40 repeat-like 332 594 IPR036322 GO:0005515
Mtr1g0241 617 Gene3D - 240 466 IPR015943 GO:0005515
Mtr1g0241 617 Gene3D - 471 603 IPR015943 GO:0005515
Mtr1g0241 617 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 415 447 - -
Mtr1g0241 617 PANTHER TOPLESS-LIKE PROTEIN 1 617 - -
Mtr1g0241 617 Pfam WD domain, G-beta repeat 412 447 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0241 Mtr-Chr1 2696725 2703995 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0241 - - mtr:MTR_1g012820 1241.87