LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g0216	ATGATAAAATCGAAATTCTTACTATCAACCAATACCATGATAAACCTCAAACTTCCCATAAACACACCAAAAACAAGACTAACAGAACAAACCATCTTAACCCTCCTTAACTCCCACTGCAACACACTCTCAAAACTAACTCAAATCCACGCTTTCATCCTCAAAACCGGCCTCCAAAACAACCCCTTAATCCTCACTAAATTCACTTCAACTTCCTCTAACCTCAACTCAATCCACTACGCCACCTCATTCTTATTCCCACCTTCCCATACTACTTCTACACCCACCCCCTCCTACGATGCCTTCCTCTTCAACACCCTCATCCGCGCTTATTCCCAAACACGCGATTCTAAATCAAATTCCTTCCTCTTTTACAGAACAATGCTACGTTACGGTGTTACACCCAATAAATTCACCTTTCCGTTTGTTCTTAAAGGGTGTGCTGGTATTGGGAGTTTGAGGTTAGGGAAATGTGTTCATGGCTGTGTTGTCAAGTTTGGATTTGAAGAGGATGTTCATGTGTTGAATACGTTGATTCATATGTATTGTTGTTTGGGAGAAGATGGGTTTGAGTTTGCGGAGAAGGTGTTTGATGATAGTCCTAAGATGGATACCGTTACTTGGAGTGCTATGATTGCTGGTTTTGTAAGATTGGGATGTTCTTCACGTGCTGTTGACTTGTTTAGAGAAATGCAGGTTATGGGTGTTTGCCCTGATGAGATCACAATGGTTTCGGTTTTGTCTGCATGTGCTGATTTGGGGGCACTTGAGCTTGGAAAATGGGTGGAATCATATGTTGAGAAGAAAAATATCCCAAAATCTGTGGAACTCTGTAACGCACTGATAGACATGTTTGCAAAGTGTGGCAATGTTGACAAAGCTATCAAATTGTTCAGACAAATGGACTCACGCACCATAGTTTCATGGACTTCAGTAATTGCTGGTCTCGCGATGCATGGTCGTGGTTTAGACGCCGTTTCTCTATTTGATGAAATGGTTGAAAATGGGATAACACCTGATGATGTTGCTTTCATTGGGGTGCTCTCTGCTTGCAGTCACTCAGGACTTGTCGACAAAGGAAGATACTATTTCGGTTCAATGGAAAGGAATTTCAGCATAGTGCCAAAGGTAGAACACTACGGATGCATGGTAGATTTGCTTTGTAGAGGTGGGTTTGTTAAAGAAGCATTTGAGTTTGTTCAAAAGATGCCTTTTGAACCAAACCAGATCATATGGAGAACCATAATCACCGCTTGTCATGCAACTGGGGAACTCAAGCTTGGAGAGAGTATCTCCAAAGAGCTGATAAAAAGTGAACCGATGCATGAGTCTAATTATGTTTTGCTGTCGAACATTTACGCGAAATTGCGACAATGGGAGAAGAAGACTAAGGTGAGGGAGATGATGGATATGAGAGGGATGAAGAAGGTTCCAGGGAGTACCATGATTGAGGTAAACAATGAAATGTATGAGTTTGTTGCAGGTGATAAGTCTCATGATCAGTATAAGGAGATATATGAAATGGTGGATGAGATGGGTAGGGAAATCAAAAAGGCAGGGTATGTGCCTACAACATCTCAAGTGTTGCTTGACATTGATGAAGAAGATAAAGAAGATGCTTTGTATAGACACAGTGAAAAGCTTGCAATAGCTTTTGCTCTTTTGAACACTCCCCCTGGAACATCAATTAGGATTGTGAAGAACTTGCGTGTCTGCGAAGATTGTCATTCTGCTACTAAGTTTATATCTAAGGTTTATAATCGAGAGATTGTCGTCAGGGACCGCAATCGCTTCCACCATTTCAAGAATGGTTTGTGCTCTTGTAGAGACTTTTGGTAA	1839	0.4138	MIKSKFLLSTNTMINLKLPINTPKTRLTEQTILTLLNSHCNTLSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPPSHTTSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYEMVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTSIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW*	613

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g0216	612	Gene3D	Tetratricopeptide repeat domain	267	370	IPR011990	GO:0005515
	Mtr1g0216	612	Gene3D	Tetratricopeptide repeat domain	24	266	IPR011990	GO:0005515
	Mtr1g0216	612	Pfam	DYW family of nucleic acid deaminases	520	612	IPR032867	GO:0008270
	Mtr1g0216	612	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	274	304	IPR002885	-
	Mtr1g0216	612	Pfam	E+ motif	490	516	IPR046849	-
	Mtr1g0216	612	Pfam	E motif	424	484	IPR046848	-
	Mtr1g0216	612	Pfam	PPR repeat	379	403	IPR002885	-
	Mtr1g0216	612	Pfam	PPR repeat	278	304	IPR002885	-
	Mtr1g0216	612	PANTHER	-	31	598	-	-
	Mtr1g0216	612	Pfam	PPR repeat family	305	352	IPR002885	-
	Mtr1g0216	612	Pfam	PPR repeat family	204	251	IPR002885	-
	Mtr1g0216	612	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	305	339	IPR002885	-
	Mtr1g0216	612	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	31	598	-	-
	Mtr1g0216	612	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	100	135	IPR002885	-
	Mtr1g0216	612	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	204	238	IPR002885	-
	Mtr1g0216	612	Gene3D	Tetratricopeptide repeat domain	371	550	IPR011990	GO:0005515
	Mtr1g0216	612	TIGRFAM	PPR: pentatricopeptide repeat domain	206	240	IPR002885	-
	Mtr1g0216	612	TIGRFAM	PPR: pentatricopeptide repeat domain	277	304	IPR002885	-
	Mtr1g0216	612	TIGRFAM	PPR: pentatricopeptide repeat domain	307	340	IPR002885	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g0216	Mtr-Chr1	2485325	2488572	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr1g0216	28	612	Glycoside Hydrolase	AT3G49170	35.630	2.06e-129	399

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr1g0216	-		-	lang:109350726	949.118