Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0185 ATGCATCCACACATTCCCCATCGTATCCTTCGTTCAATTCTCTCATCAACTCTCAAACCAATCCATCTACGCCCATTCTCCTCATGGTTATCCCAACCCGGAAACCCACTCATCAACTGGCCCTCCCTCCCATCCAAACCAACTCCAATCCCAACCCTAAACCCAAACCCAAATTCAAAACCCGAATCCTCCCAACCCACTTTCTCCCCTAACGATTTCACTCTCATTTCAACTCTCTTCACCAACCCATCCATCTCACCCGGTTCATCTCTCCTCACCAACCTAACCCAAACCGGAATCAAACCTACTCCCCCTCTCCTCCACGCTGTCTTCGACCATTTCGCTTCGTCGCCGAAGCTACTTCATTCGCTTTATCTCTGGGCTCTAAATCAACCCGGGTTTAAACCTGATTCGAGTTTGTTTGATTCCGTAATCAATGCTCTTGCGAAAATGAAGGAGTTTGACGATGCTTGGAGTCTTGTTCTTGATCGTATTCGTAGAGATGATGATGATGATGAGAAATTGGTTTCTGTTGGGACTTTTGCTATCATCATTCGACGATATGCCAGAGCAGGTATGCACAAGGCTGCTATTAGGACGTTTGAGTTTGCAAAAGATAAGAAGTCCATTGTGGATTCCGTGTCAGAAATGAGTTTATTTGAGATATTAATTGATTCACTCTGCAAAGAAGGGTCTGCAAGGGAAGCTTCAGAGTACTTGCTTAGGAGAAAGGAGACAGACCTGGGTTGGGTTCCTTCAATTCGTGTTTATAACATAATGTTAAATGGATGGTTTCGAGCAAGGAAACTCAAACACGCTGAGAGACTTTGGGAAGAGATGAAGAACGAGAATGTGAGACCGAGTGTTGTGACATATGGTACCCTTGTGGAAGGATACTGTCGGATGCGCCGTGTTGAAAAGGCGCTTGAGATGGTTGGTGAAATGACCAAAGAGGGAATTAAACCAAATGCAATTGTATATAACCCCATCATTGATGCATTGGCAGAAGCTGGGAGATTTAAAGAGGCTTTGGGTATGATGGAGCGTTTTCATGTTTTGCAAATAGGTCCTACTCTTTCAACTTACAATTCTCTCGTGAAGGGTTTTTGTAAGGCAGGAGATATTGAAGGTGCTAGTAAAATTCTTAAAAAGATGATAAGTCGAGGTTTCCTTCCAATCCCCACTACCTATAATTACTTTTTTAGGTACTTTTCAAGATGCGGAAAAGTTGATGAAGGGATGAACCTGTATACCAAGATGATTGAATCTGGACATAACCCGGATCGTCTAACTTACCATCTTGTGTTAAAGATGTTATGTGAAGAGGAGAAGTTAGAGTTGGCAGTTCAAGTCAGCATGGAAATGAGGCATAAAGGATATGACATGGACTTGGCTACGAGTACCATGTTAACTCATTTGCTGTGCAAAATGCACAAGTTGGAAGAGGCTTTTGCAGAATTTGAGGACATGATAAGAAGAGGTATTATTCCTCAATATCTTACATTTCAAAAATTGAATGTTGAGTTAAAGAAACAAGGTATGAATGAAATGGCTCGAAAGCTTTGCCACTTGATGTCGTCTGTTCCCTATTCTGACAAATTGCCAAATACATATGGTGAAGTCAGAGATGATGCACATGCACGTAGGAAATCTATAATTCAGAAAGCCAAAGCAGTTTCTGAATTGCTGAAGGACCCCAAAGAACTTGATAAGTTTAGAAGTTCATCAGAAGATGCTGTCTCAAGTTTGAATAAGTTTGAATAA 1764 0.4178 MHPHIPHRILRSILSSTLKPIHLRPFSSWLSQPGNPLINWPSLPSKPTPIPTLNPNPNSKPESSQPTFSPNDFTLISTLFTNPSISPGSSLLTNLTQTGIKPTPPLLHAVFDHFASSPKLLHSLYLWALNQPGFKPDSSLFDSVINALAKMKEFDDAWSLVLDRIRRDDDDDEKLVSVGTFAIIIRRYARAGMHKAAIRTFEFAKDKKSIVDSVSEMSLFEILIDSLCKEGSAREASEYLLRRKETDLGWVPSIRVYNIMLNGWFRARKLKHAERLWEEMKNENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIKPNAIVYNPIIDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDIEGASKILKKMISRGFLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEEKLELAVQVSMEMRHKGYDMDLATSTMLTHLLCKMHKLEEAFAEFEDMIRRGIIPQYLTFQKLNVELKKQGMNEMARKLCHLMSSVPYSDKLPNTYGEVRDDAHARRKSIIQKAKAVSELLKDPKELDKFRSSSEDAVSSLNKFE* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0185 587 MobiDBLite consensus disorder prediction 40 56 - -
Mtr1g0185 587 Pfam PPR repeat 319 348 IPR002885 -
Mtr1g0185 587 Pfam PPR repeat 357 385 IPR002885 -
Mtr1g0185 587 Gene3D Tetratricopeptide repeat domain 392 568 IPR011990 GO:0005515
Mtr1g0185 587 PANTHER LEAF PROTEIN-LIKE 84 585 - -
Mtr1g0185 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Mtr1g0185 587 Gene3D Tetratricopeptide repeat domain 316 387 IPR011990 GO:0005515
Mtr1g0185 587 Gene3D Tetratricopeptide repeat domain 241 315 IPR011990 GO:0005515
Mtr1g0185 587 Pfam PPR repeat 222 240 IPR002885 -
Mtr1g0185 587 Pfam PPR repeat 468 495 IPR002885 -
Mtr1g0185 587 MobiDBLite consensus disorder prediction 40 67 - -
Mtr1g0185 587 Pfam PPR repeat family 252 301 IPR002885 -
Mtr1g0185 587 Pfam PPR repeat family 396 440 IPR002885 -
Mtr1g0185 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Mtr1g0185 587 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 84 585 - -
Mtr1g0185 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Mtr1g0185 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Mtr1g0185 587 TIGRFAM PPR: pentatricopeptide repeat domain 325 352 IPR002885 -
Mtr1g0185 587 TIGRFAM PPR: pentatricopeptide repeat domain 361 392 IPR002885 -
Mtr1g0185 587 TIGRFAM PPR: pentatricopeptide repeat domain 396 428 IPR002885 -
Mtr1g0185 587 TIGRFAM PPR: pentatricopeptide repeat domain 256 288 IPR002885 -
Mtr1g0185 587 TIGRFAM PPR: pentatricopeptide repeat domain 290 324 IPR002885 -
Mtr1g0185 587 Gene3D Tetratricopeptide repeat domain 103 240 IPR011990 GO:0005515
Mtr1g0185 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Mtr1g0185 587 SUPERFAMILY HCP-like 255 435 - -
Mtr1g0185 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Mtr1g0185 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0185 89 497 Miscellaneous Gene Families AT4G11690 26.593 8.25e-46 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0185 - - gmx:100793484 829.32