Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0158 ATGAGCAGAACAACGACTCGGGGTAAAAATAAAAGACTGAGACAAGGGGATGATGATACCGGAACTTCAGAAATATTGAGGAAAATATACAAAACAGGCGTAGCAACTGATGATGATATGAACAAACTGTATATGATTACAAAGCCAGTCTGTTCAGGTTGTCGTGTTAATACTAAAGACAATCCGAATTGCTTCTGTGCATTGGTTCCGCCTCCAAGTGGAACGCGGAAGTCTGGCATATGGCAGAAGATATCTGATTTTGTTGATAGTCTTGGCTTTGACCCAAACACGGAACTTCGTGAATCTGCTAATTCACCCGCAGGACTCACAAATCTTGGAGCAACGTGTTATGCTAATAGCATACTCCAATGCTTGTATATGAATAAACGTTTTCGAGAAGGATTATTTTCTGTAGAACCAGATATTTTTCAGCAACAACCAGTGTTAGATCAACTAGCTCGGCTTTTTGCTCAGTTGCATTTAAGTAAAAAGGCTTTCATAGATTCTTCTCCATTTGTAAAAACGCTGGAGTTGGACAATGAAGTTCAGCAGGATAGCCATGAGTTCCTGACATTGCTTCTATCATTGCTTGAGCGTTGCCTTAGCCGTTCCGAAATTTCCAAGGCAAGAACGATAGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCACGTGACAACGTGCTCACAATGTGGAAGAGACTCTGAAGCTTCTTCCAAAATGGAAGACTTCTATGAGTTGGAGTTGAATGTCAAGGGATTGAAAAGTTTAGACGAGAGCTTAGATGATTACCTCACTGTTGAAGAGCTTAATGGAGACAATCAATATTTTTGTGAGTCATGTAAAACAAGGGTTGATGCTACTCGCAGCATCAAGCTGCGAACATTACCTGATGTGCTTAATTTTCAGCTTAAGCGCTATGTCTTCCTTCCAAAGACAACAACAAAGAAGAAAGTTACTTCTCCATTTTCATTTCCCGCTGAACTTAGTATGCACCACAGATTGTCTGAGCCATCTCAGTCTGAATTGATATATGACTTGTCAGCTGTTCTGATACACAAGGGAACTGCAGCTAATAGTGGTCATTACATTGCACACATCAAGGATGTGAACACAGGGCAATGGTGGGAATTTGATGATGAGCTTGTTACTAACTTGGGCCGTTGTCCATTTGCCGAAGAAGCTTCATGCTCTGCTTCTAAATCTGTTAAGAATGATGTGAATCATTCTAATTTCTCTGAAGCAAGGGTAGCTGACAGTAATGGAAGTGCTTCAAATGTAAAAGTTTCACAATCTTTACCCATGGAGACATTTTCATCTAGTGATGCATATATGTTGATGTACCATCTTAAGCATACCAAAATTTTTAGTGAGAACGGGGGAATGGAAACTAGTGCTAATCATACTGAAACAGTCGATGTTCCAATTACTGCACAAGATAATGATTGTCTTCCTTCTCATTTTTGTGAAGAGATTCAAAATTTCAATGCCTCATATCTTGATACTTGCCAGCAGTACAACCATAGGAAAGAGGTAGAATTGAGTCGTATCAGTGAGAGGAGAGAAGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTTCAACCACTGGAGCAACCGTATTTTTGGATTTATAGCGACTGGCTTCGCCAATGGGCGGAGAATGTTACTCCAAGTGCTATTGACAACACATCTATCCAATGTTCACACGGTAAAGTCCCAGTGTCAAAGGTTACTTCGACAAAACGACTGTCTTCTAAAGCATGGGATAAGTTACTGTCTAAGTATGGTGGAGGGCCAACACTTTCTCATGAGGACTGCTGTTTGGACTGTCTGATTGATGGGGCTCGGAATGTCGTGTCAGCAGACACTTATCGGCATCAAAGAGAATCATTTAAGCAACTTGCACGGGATATTCTTGATGGAAAAAACGAAGATGGAAAGTACTACGTGTCTAGATCATGGTTGCAGCAGTGGTGGAAAAGAAAAGTTGTCGATGCTCCATCTGAAGCTGATTCTGGACCAACAGCGGCTATTAGTTGTCCACATGGACAACTTATGCCTGAGCAAGCAACTGGTGCTAAGCGGGTGCTTGTTCCTGAGGGTTTTTGGCTCTTCTTATATGAAGATGCAACTTCTGTGAAAAGTGATGATCTTCTGGTCTGCCCTACGTTTCCTTTAGACTCCAAAGAGTGCTCTGAATGCAATAGTGAATTATCTGAAGTGTTTTGCATGGAGGACTCTATGAGGTTATTAAAACAAAGGCAGCGTCAGAGTCATGAGAAGCTGTTCAATGGGAAAAGTATGCCTCTCTCTCTAGATTGCACATATTTCTTAGTTCCTTCCTCTTGGATTTCAAAATGGAGAACTTATATCAACCCAGCTGTCAAGAATTCTGACACACCTGAAACATTAAATGTGGTGATTGGTGCACTGCTCTGCGAAAAGCACTCACGACTCATTGAAAGGCCTCCTGAACTGATTCTCAGACGTGGTGCTATAATTCCAAGGGAGTCTTCTGCAGGTGGCTTAACCATCATATCTGAGAATGATTGGAAATGTTTCTGCGAAGAATGGGGTGCTACTGAAACCCAAGGAGTATCTGCAAAGATTGAGAAAATTAATGATTCGGTGAATGCTACAGCTGGATCTTGTGAAGAGATGGCAATATGTGAGGACCAGTTGGCCAACTGGGATAAGGGGAATAATGAAAGTGGGAATGGTCAATTTTTGATCAAGACTTGTCCCGAGGTTTGTGAAAGTTGCATTGGAGAAAAAGAAAGCTGCGAGTTAGTGCATAAACTTAATTATTCCAATGAGGATATATGTGTAATTCTTGTACGCGGAAAAGAGGTCCCTAGATCAATCTTGGAGGCTTCAAAGGGATTTGTTGAAGCAGATCGACGGGTTTCTAAACGCTCCAGGAAGATTAAAAATGGGAGTTCAATTAATCTAAAAGTGTCTGCTTCAACAACAATTTACCAGCTGAAAATGATGATATGGGAATCATTTGGGGTTGTCAAAGAAAACCAGATACTACAAAAAGGTGATATAACAATCGATCACATTGACGAAAATACTACACTTGTGGACGTTAACATATTTGCTGGAGATCAGATTATTGTGAGGGACTCTGAGATCCATGAAAATCGAGATATTGCTGATGAGCTGTGTAACGAGAAAAAGGATACACAGCATACCGAGGGAGGGTTTCGTGGAACACTTTTGACTTCAAATGTTTCATCTCAGGTTGTGTAG 3252 0.4105 MSRTTTRGKNKRLRQGDDDTGTSEILRKIYKTGVATDDDMNKLYMITKPVCSGCRVNTKDNPNCFCALVPPPSGTRKSGIWQKISDFVDSLGFDPNTELRESANSPAGLTNLGATCYANSILQCLYMNKRFREGLFSVEPDIFQQQPVLDQLARLFAQLHLSKKAFIDSSPFVKTLELDNEVQQDSHEFLTLLLSLLERCLSRSEISKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGLKSLDESLDDYLTVEELNGDNQYFCESCKTRVDATRSIKLRTLPDVLNFQLKRYVFLPKTTTKKKVTSPFSFPAELSMHHRLSEPSQSELIYDLSAVLIHKGTAANSGHYIAHIKDVNTGQWWEFDDELVTNLGRCPFAEEASCSASKSVKNDVNHSNFSEARVADSNGSASNVKVSQSLPMETFSSSDAYMLMYHLKHTKIFSENGGMETSANHTETVDVPITAQDNDCLPSHFCEEIQNFNASYLDTCQQYNHRKEVELSRISERREEVRSVLAEAPVQPLEQPYFWIYSDWLRQWAENVTPSAIDNTSIQCSHGKVPVSKVTSTKRLSSKAWDKLLSKYGGGPTLSHEDCCLDCLIDGARNVVSADTYRHQRESFKQLARDILDGKNEDGKYYVSRSWLQQWWKRKVVDAPSEADSGPTAAISCPHGQLMPEQATGAKRVLVPEGFWLFLYEDATSVKSDDLLVCPTFPLDSKECSECNSELSEVFCMEDSMRLLKQRQRQSHEKLFNGKSMPLSLDCTYFLVPSSWISKWRTYINPAVKNSDTPETLNVVIGALLCEKHSRLIERPPELILRRGAIIPRESSAGGLTIISENDWKCFCEEWGATETQGVSAKIEKINDSVNATAGSCEEMAICEDQLANWDKGNNESGNGQFLIKTCPEVCESCIGEKESCELVHKLNYSNEDICVILVRGKEVPRSILEASKGFVEADRRVSKRSRKIKNGSSINLKVSASTTIYQLKMMIWESFGVVKENQILQKGDITIDHIDENTTLVDVNIFAGDQIIVRDSEIHENRDIADELCNEKKDTQHTEGGFRGTLLTSNVSSQVV* 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0158 1083 Gene3D - 744 867 IPR035927 -
Mtr1g0158 1083 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Mtr1g0158 1083 ProSiteProfiles DUSP domain profile. 514 606 IPR006615 GO:0004843
Mtr1g0158 1083 MobiDBLite consensus disorder prediction 1 20 - -
Mtr1g0158 1083 Gene3D - 973 1043 - -
Mtr1g0158 1083 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 1053 - -
Mtr1g0158 1083 SUPERFAMILY Cysteine proteinases 104 450 IPR038765 -
Mtr1g0158 1083 SUPERFAMILY Ubiquitin-like 974 1043 IPR029071 -
Mtr1g0158 1083 Gene3D - 505 605 IPR035927 -
Mtr1g0158 1083 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Mtr1g0158 1083 SUPERFAMILY DUSP-like 517 605 IPR035927 -
Mtr1g0158 1083 ProSiteProfiles DUSP domain profile. 749 869 IPR006615 GO:0004843
Mtr1g0158 1083 Gene3D Cysteine proteinases 93 451 - -
Mtr1g0158 1083 CDD Ubl_USP48 966 1076 IPR044743 GO:0004197|GO:0004843|GO:0016579
Mtr1g0158 1083 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 1053 - -
Mtr1g0158 1083 CDD Peptidase_C19L 108 447 IPR033841 GO:0004843
Mtr1g0158 1083 ProSiteProfiles DUSP domain profile. 621 723 IPR006615 GO:0004843
Mtr1g0158 1083 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 450 IPR028889 -
Mtr1g0158 1083 SMART dusp 532 608 IPR006615 GO:0004843
Mtr1g0158 1083 Pfam Ubiquitin carboxyl-terminal hydrolase 108 447 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0158 Mtr-Chr1 1752129 1762930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0158 86 379 Miscellaneous Gene Families AT4G31670 28.526 1.50e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0158 - - gmx:100795556 1741.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0158 1 1752129 1762930 Mtr1g0158 1 1752129 1762930 ECH
Mtr1g0158 1 1752129 1762930 Mtr3g2554 3 39512824 39528690 PCT