Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0129 ATGCTTCTAACTCACGCTTTCTCTTCAATCCATTCTTCATACATTCCCATTTCTTCGTGTTCTTCATCTTCTCCAATACGACGTCGTTTATTTACCACTCCTCGCAAAACGAATCTGAAACACCTCACTTCACGAATAGTTCAACTAAGTCGCCGAAAACAGCTTCGCCAGATTCTGAATGAAATTGAAGTTGCAAAGAAACGTTTTGGAAAATTGAACACGATTGTGAAGAATGCGGTTATGGAAGCTTGTGTTCGTTGCGGTGATATTGATTCAGCTCTTAACATTTTTGATGAGATGAAGAATCCTGATGCTTGTGGTGTTGATACTGTCACCTATGCCACGCTTTTGAAGGGTTTAGGCAAGGCACATAGATTTGATGAAGCTTTTAGATTGCTTGAATCTGTCGAAAATGGTACTGCCGTGGGAAATCCAAAGTTGTCAGCACCATTGGTCTTTGGTTTACTAAATGCCTTAGCAGAAGCAGGAGACCTGCGTCGTGCAAATGGCCTCCTTGCCTGTTATGGTTCTGTGCTTCGTGAAGGCGAACATTTTTCAGTCTCAGTATACAACCTTCTAATAAAGGGGCATATAAACTCAGGCTGTCCTCATACTGCAATAAACATGCTCAATGAAATTTTACATCAAGGAATAATGCCTGACAGGCTCACATATAACACACTAATTTTAGCATGTGTTCAGAGTGAAAAGTTGGATGTTGCCATGCAATTATTTGGGGAAATGAAGGAAAAAGCGCAGGAATTCATCCATGATGATCTGTTTCCAGATATCGTTACATACACAACATTGCTCAAGGGTTTGGGGCAGGCAAAGGATCTCGTTTCAGTTATGCAAATAGTGCTGGAGATGAAATCATGTTCTCAGTTATACATTGACAGAACTGCTTACACTGCAATAGTTGATGCTTTACTAAAATGTGGCTCAGTTAAGGGTGCTCTGTGTATTTTTGGAGAAATACAGAAACAGGTTGGTTGGAATCCAGAGTTGAGACCGAAGCCTCATCTCTATCTTTCCATGATGCGTGCCTTTGCTTTTAGAGGAGATTATGATCTGGTTAAAAATTTGCATAAGCGGATTTTGCCAGATACTTCAGGAACAATCTTACCGGTTTCCCAAGAAGAAGCTGACCACCTTCTAATGGAAGCAGCCCTGAATGCTGGCCAGGTTGATGTCGCTACTAAAACTCTTATGTATATTGTTTCAAGATGGAAGGGCATATCCTGGACGAGTCATGGAGGCATGGTTGCTTCTCGTATTGAGGCCTTGTCAGGATTCTCAGCATCTTTATTCAATCCTTTCTTACTTCCCCAGGTTTCACCTTCTGAACCGATTGAGGGCTTCATGATGCCATTTAAAGCAACACGGCCCCTACTAGGTACCATAAAGCTGAAGGATGTGGTATCACGTTTCTTCAATGATGCAGTAGTTCCTATTGTAGATGAGTGGGGAAGCTGTACAGGGCTTTTGCACCGCAAAGACTGCACTCAGTTGGATGCTCCGCTTTCAACAATGATGAGAAGCCCTCCTCCCAGTGTTGCAGCTTCAACATCTGTTGGTCATGTAATTGATTTAATTTTGGAGAAGGGTTACCCAATGGTTATCATTTTAAATTGCACCGACTCGTATGCTACTTCATACGGCTGTAGAGCAGTTGGAGTTTTTACATTAGAACAACTGAATAGGCTCATCAAACCTGTATCTGAAGTGAAAGAGACAGACCTTTCACTCTGCAGAAAATAG 1761 0.4185 MLLTHAFSSIHSSYIPISSCSSSSPIRRRLFTTPRKTNLKHLTSRIVQLSRRKQLRQILNEIEVAKKRFGKLNTIVKNAVMEACVRCGDIDSALNIFDEMKNPDACGVDTVTYATLLKGLGKAHRFDEAFRLLESVENGTAVGNPKLSAPLVFGLLNALAEAGDLRRANGLLACYGSVLREGEHFSVSVYNLLIKGHINSGCPHTAINMLNEILHQGIMPDRLTYNTLILACVQSEKLDVAMQLFGEMKEKAQEFIHDDLFPDIVTYTTLLKGLGQAKDLVSVMQIVLEMKSCSQLYIDRTAYTAIVDALLKCGSVKGALCIFGEIQKQVGWNPELRPKPHLYLSMMRAFAFRGDYDLVKNLHKRILPDTSGTILPVSQEEADHLLMEAALNAGQVDVATKTLMYIVSRWKGISWTSHGGMVASRIEALSGFSASLFNPFLLPQVSPSEPIEGFMMPFKATRPLLGTIKLKDVVSRFFNDAVVPIVDEWGSCTGLLHRKDCTQLDAPLSTMMRSPPPSVAASTSVGHVIDLILEKGYPMVIILNCTDSYATSYGCRAVGVFTLEQLNRLIKPVSEVKETDLSLCRK* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0129 586 Gene3D Tetratricopeptide repeat domain 254 432 IPR011990 GO:0005515
Mtr1g0129 586 TIGRFAM PPR: pentatricopeptide repeat domain 78 101 IPR002885 -
Mtr1g0129 586 TIGRFAM PPR: pentatricopeptide repeat domain 265 293 IPR002885 -
Mtr1g0129 586 TIGRFAM PPR: pentatricopeptide repeat domain 189 221 IPR002885 -
Mtr1g0129 586 TIGRFAM PPR: pentatricopeptide repeat domain 111 135 IPR002885 -
Mtr1g0129 586 TIGRFAM PPR: pentatricopeptide repeat domain 224 251 IPR002885 -
Mtr1g0129 586 PANTHER OS09G0431600 PROTEIN 17 580 IPR044781 -
Mtr1g0129 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Mtr1g0129 586 Gene3D Tetratricopeptide repeat domain 29 140 IPR011990 GO:0005515
Mtr1g0129 586 Gene3D Tetratricopeptide repeat domain 154 253 IPR011990 GO:0005515
Mtr1g0129 586 Pfam PPR repeat 302 328 IPR002885 -
Mtr1g0129 586 ProSiteProfiles CBS domain profile. 511 578 IPR000644 -
Mtr1g0129 586 Pfam Pentatricopeptide repeat domain 254 291 IPR002885 -
Mtr1g0129 586 CDD CBS_pair_SF 467 544 - -
Mtr1g0129 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Mtr1g0129 586 Pfam CBS domain 511 570 IPR000644 -
Mtr1g0129 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 109 139 IPR002885 -
Mtr1g0129 586 Pfam PPR repeat family 73 121 IPR002885 -
Mtr1g0129 586 Pfam PPR repeat family 187 232 IPR002885 -
Mtr1g0129 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 103 IPR002885 -
Mtr1g0129 586 SUPERFAMILY CBS-domain pair 482 569 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0129 Mtr-Chr1 1445995 1452237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0129 30 391 Miscellaneous Gene Families AT4G11690 23.450 2.55e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0129 - - mtr:MTR_1g009650 1124.38