Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0031 ATGGGTCTCTGTTTTGGTTTTAGACTAAACACAAAACTCAGATATAGTACTGTCCCTCTTCACCACTCTTCTCCTTTCTTCTCCAATTCACATATCTTCCTCTCTTCTTCATCTTCTGCTGGAGGCAGGGAAACTTTATTCAACCCCGTGAGGTTGTCTTTGCTTTCAACAGTTTATGAGGAAGGAGAAACTTTGCAGAAAGATTTTCGAAAGACATTTGCATTTTCATCAGCATTGGAAGCACCGGAAAAAGATTTATTGCAAGGAGGAGAACTAACAAAGGTAAATAAAGGAAAGAGGTCGCTTAGCAGTGTGCATGAAATGATAGATAACTCGCATTTACCTTTTGAGGAGTCACATTTCGGTTTGTTAATGGAGAACCTTGGTGTTTTAGAAGAAACTTTTGCTGATTCTGAAGCATTGAGGTTGGAAAAGAATATTATATTGCAACTAGAAAAGCTTGGAGCTCTTGAGTTGTTCAATGTTTGTCTAACAACATCTTTCGGAACCTCATGCATATCGAACTGTACTCACAAAGTTCTTGAACAAGTTGAAGAGAATAAGAGAAACCACAAAGTAGATGACTATACAGGTAAAGTTATTGTCCATTCCAGCAAAAGAAAGGAAAATAGAAGAAGAAAGAGAGGATCCGTTTCCATAGCACCTTCCTCTCGGTCCTTGCCTTTAGACGATAATCAAGAAGATCCATTACGTTCTTCACCGGCTTCTTTTGTAAAAAGAGCATCAAATACTAAAAATAAAAGAGCGGTGATTGCTCAAAGGGAGGTGGAAATGTCAAAAGGTGTAAAGGTTCTAGCAGAATTAGAGAAAATTAGAACAGCTATAGAAGAGGATACAAAGCAAGTGGTAAGCTTGAGTAGCTGGGCAGAAACATCTGGAGTTGATGAGAAGGTGCTACAACAGCAACTGTATCATGGCTATTATTGTAGAGATGAGTTGATACGGAGTACTCGTTCCTTAGTTCTATACTTTGCTAGAAAATACAGGGGTATGGGAATAGCTTTGGAAGATTTGCTTCAGGTAGGATATATTGGTGTTCTCCAAGGAGCAGAGCGATTTGACAGTACAAAAGGATACCGATTCTCAACCTATGTGCAGTACTGGATAAGGAAATCAATGTCAAGAATGGTGGCGAAATATGCTCGAGGAATCACTGTTCCTTGGTCGATGAACAAGGCAATAAGTCAGATCCAGAAAGCACGGAAGGTCTTGAAAAATACGACCATGAAATATCCCAATGATCTTGAAATTGCTAAGATGACAGGTCTTTCACTGGACAAAATCATGTCAGCTAGCCATTGTCTAAGAACAGTTTCTTCAATGTATCGTGGCATTGAATACATGGGTCATATGCCCGATTTGTCGATAGAGAGTCCTGAAGAGACTGTCATGAAACAACACATTAAGAAAGATATACATGATATCCTCCAAAGCTTGGACTCAAGGGAAAGGCAAATAATAATCCTACGATTCGGCCTTAATGATGATCACCAACCCAAGTCTCTTGAATATATAGGGAAGATTTTCAAAGTTAGCAAAGAGTGGATAAGGAAAATAGAGAAAAAAGCTCTCACAAAATTAAGGAATGAAACAAACATCTCAAAGTTGAATTATTATTTGGATCTGTAG 1650 0.3855 MGLCFGFRLNTKLRYSTVPLHHSSPFFSNSHIFLSSSSSAGGRETLFNPVRLSLLSTVYEEGETLQKDFRKTFAFSSALEAPEKDLLQGGELTKVNKGKRSLSSVHEMIDNSHLPFEESHFGLLMENLGVLEETFADSEALRLEKNIILQLEKLGALELFNVCLTTSFGTSCISNCTHKVLEQVEENKRNHKVDDYTGKVIVHSSKRKENRRRKRGSVSIAPSSRSLPLDDNQEDPLRSSPASFVKRASNTKNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSSWAETSGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYIGVLQGAERFDSTKGYRFSTYVQYWIRKSMSRMVAKYARGITVPWSMNKAISQIQKARKVLKNTTMKYPNDLEIAKMTGLSLDKIMSASHCLRTVSSMYRGIEYMGHMPDLSIESPEETVMKQHIKKDIHDILQSLDSRERQIIILRFGLNDDHQPKSLEYIGKIFKVSKEWIRKIEKKALTKLRNETNISKLNYYLDL* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0031 549 Gene3D - 173 389 - -
Mtr1g0031 549 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 451 538 IPR013324 -
Mtr1g0031 549 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 393 449 IPR013324 -
Mtr1g0031 549 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 317 537 IPR014284 GO:0003700|GO:0006352|GO:0006355
Mtr1g0031 549 MobiDBLite consensus disorder prediction 204 248 - -
Mtr1g0031 549 PRINTS Major sigma-70 factor signature 344 357 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mtr1g0031 549 PRINTS Major sigma-70 factor signature 368 376 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mtr1g0031 549 PRINTS Major sigma-70 factor signature 486 498 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mtr1g0031 549 PRINTS Major sigma-70 factor signature 508 523 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mtr1g0031 549 PRINTS Major sigma-70 factor signature 523 534 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mtr1g0031 549 PANTHER RNA POLYMERASE SIGMA FACTOR SIGC 19 548 - -
Mtr1g0031 549 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 19 548 - -
Mtr1g0031 549 Gene3D - 464 544 IPR036388 -
Mtr1g0031 549 Pfam Sigma-70, region 4 483 536 IPR007630 GO:0003700|GO:0006352|GO:0006355
Mtr1g0031 549 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 260 389 IPR013325 GO:0003700|GO:0006352|GO:0006355
Mtr1g0031 549 CDD Sigma70_r4 476 535 - -
Mtr1g0031 549 Pfam Sigma-70 region 2 320 388 IPR007627 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0031 Mtr-Chr1 342413 346704 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0031 K03093 - gmx:100802522 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0031 1 342413 346704 Mtr1g0031 1 342413 346704 ECH