Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0028 ATGCTTCCTCGTTTCTCTAACCTTCTACGCCACCCTCCCTTCAACTCCATCATGTCACGTGCCATCACGTGCTCTCTCCCTCAACCCCATTCCTCCTATTCCGTCTCATTCAACAACTCTTCCGTTTTTCCTTTCTCTAACTCTCCTCCTCGCCGTATCTTGTTTGCGCTATTTGCTCAGCAGCCGCAACCGTTTCGTGGAGTCCGTGCAGCCGGCGGAGGAGGAAAGAGAGAGTATCGGAAATTCAGAAGCCGAGCGCCGAAGAGGAAGAAGGAGTTAGAACTCTCCGTCCCTATTTGCATCGAAGAAAGTTTGCCTGATGATCCTGAAATCTTGAATATTGCAGAGATGCTTCGTCTAAATGTCCCAATGGCAATGAAACTGGCATTTGATGGTTTGAAAGGTTCAGAGTATAAAACAAGAGATACTGCTATAGATGATGTTGGCAGGTTTGAAAGTGTTGAGTTATCCGTGCTTCTTTGTAATGATGAGTTTATACAAAAACTTAACAGGGAATGGAGAGATGAAGATCACGCTACCGATGTTCTCTCAATGTCACAACATGAACCTGGACTCAATCTTCCTATTCTTATGTTGGGTGATATTGTAATTTCTCTTGAGACAGCGGCAAGACAAGCAGAGGAAAGAGGACACACACTTCTTGATGAGATCCGTATCCTCATGGTCCATGGCTTGTTACATCTTTTGGGATTTGATCATGAATTAAGTGAAGAGGCTGAAGTAGAAATGGAAAAAGAAGAGGAACTCCTTTTGCAAAGTCTTGGTTGGAAAGGAAAAGGGCTAATAAAGAGTGCATATGATGCTGAAGAAAATGCAAGTTCTCAGCAAAACAGTTCAGATGACAGGAAGAAAGAAGGCAGTCTTCGATTTTACAAACCAAAGTTCAGCTATATCTTCTGTGATATGGATGGAACATTGCTGAACAGCAAAAGTCAAATTTCTACTTCAACTGCCAAGGCTTTGAGAGAGGCCTCAGCAAGGGGCGTGAAAATTGTGATAGCCACTGGAAAAGCTCGTCCAGCTGTGATAGATATTTTTAAGAAGGTGGATTTAGCTGGAAAAGATGGCATTGTTTCAGAATTTTCTCCTGGGGTTTTTTTACAGGGGTTGCTTGTTTATGGTAGACAAGGTCGGGAAATATATAGGAGCAGCTTAGATCCGGACGTCTGTAGAGAGGCATGTCTTTACTCTTTGGAGAGTAAGGTTCCACTTATTGCATTTTGTGAAGGCCGCTGCTTAACCCTTTTTCATGATCCACTTGTTGATTCACTCCATACAATATACCATGAACCAAAGGCTGAGATCATCCCTTCTGTTGAAGATCTTCTGGCATCTGCCGACATACAGAAAATGATTTTCTTAGACACTGCCCAGAGTGTGTCGGATACATTACGTCCATACTGGTCAGATGCAACAAAAGGTCGTGCCACTGTTGTTCAAGCTGTACCGGACATGCTGGAAATTGTACCCTTGGGAACATGTAAAGGGAACGGAGTAAAAGTGCTGCTTGATCACTTGGGAGTTACTGCTAATGAGATAATGGCTATTGGTGATGGCGAAAATGATGTAGAGATGCTTGAGCTGGCTTCTTTAGGCATTGCACTGAGTAATGGATCAGAGAAGACCAAAGCTGTGGCAAACGTAATTGGTTTAAGCAACGATGAAGATGGTGCAGCCGACGCCATCTATCGATATGCATTCTGA 1725 0.4348 MLPRFSNLLRHPPFNSIMSRAITCSLPQPHSSYSVSFNNSSVFPFSNSPPRRILFALFAQQPQPFRGVRAAGGGGKREYRKFRSRAPKRKKELELSVPICIEESLPDDPEILNIAEMLRLNVPMAMKLAFDGLKGSEYKTRDTAIDDVGRFESVELSVLLCNDEFIQKLNREWRDEDHATDVLSMSQHEPGLNLPILMLGDIVISLETAARQAEERGHTLLDEIRILMVHGLLHLLGFDHELSEEAEVEMEKEEELLLQSLGWKGKGLIKSAYDAEENASSQQNSSDDRKKEGSLRFYKPKFSYIFCDMDGTLLNSKSQISTSTAKALREASARGVKIVIATGKARPAVIDIFKKVDLAGKDGIVSEFSPGVFLQGLLVYGRQGREIYRSSLDPDVCREACLYSLESKVPLIAFCEGRCLTLFHDPLVDSLHTIYHEPKAEIIPSVEDLLASADIQKMIFLDTAQSVSDTLRPYWSDATKGRATVVQAVPDMLEIVPLGTCKGNGVKVLLDHLGVTANEIMAIGDGENDVEMLELASLGIALSNGSEKTKAVANVIGLSNDEDGAADAIYRYAF* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0028 574 SUPERFAMILY HAD-like 298 572 IPR036412 -
Mtr1g0028 574 Pfam Endoribonuclease YbeY 150 260 IPR002036 GO:0004222|GO:0006364
Mtr1g0028 574 ProSitePatterns Hypothetical cof family signature 2. 523 545 - -
Mtr1g0028 574 Gene3D - 391 498 - -
Mtr1g0028 574 SFLD C2.B: Phosphomannomutase and Phosphatase Like 305 573 - -
Mtr1g0028 574 Gene3D Metalloproteases ("zincins"), catalytic domain 133 263 IPR023091 GO:0004222
Mtr1g0028 574 ProSitePatterns Hypothetical cof family signature 1. 304 315 - -
Mtr1g0028 574 TIGRFAM Cof-subfamily: Cof-like hydrolase 304 569 IPR000150 GO:0016787
Mtr1g0028 574 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 21 574 IPR002036 GO:0004222|GO:0006364
Mtr1g0028 574 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 21 574 - -
Mtr1g0028 574 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 304 541 IPR006379 -
Mtr1g0028 574 ProSitePatterns Uncharacterized protein family UPF0054 signature. 230 240 IPR020549 -
Mtr1g0028 574 Hamap Endoribonuclease YbeY [ybeY]. 96 265 IPR002036 GO:0004222|GO:0006364
Mtr1g0028 574 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 150 266 - -
Mtr1g0028 574 Gene3D - 305 569 IPR023214 -
Mtr1g0028 574 CDD HAD_Pase 305 571 - -
Mtr1g0028 574 Pfam haloacid dehalogenase-like hydrolase 305 569 - -
Mtr1g0028 574 TIGRFAM TIGR00043: rRNA maturation RNase YbeY 155 261 IPR002036 GO:0004222|GO:0006364
Mtr1g0028 574 SFLD Haloacid Dehalogenase 305 573 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0028 - - gmx:100810101 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0028 1 309271 315748 Mtr1g0028 1 309271 315748 ECH