Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0018 ATGGAAGAAGAAGACAACAACAGAAGAAGAATGATGGAGAGAGAACGATACGAACGATACCAAATCGAGCAAATTCTCCAGCTCGATCTCGAAGAATTGCAGGTAGAAGAAGTCGACGTTTTCCACGATTCTTCCGACGATGACAACAACAACAACAATCACGCTAATCCTATTCCTGGCTATGGCACCGCAGGCGTCGTCCCGGGTGAATTCACTTACAATACTTGTATAGCATCCTTACATACATATCTGGGCGATGTTGAAGACACACACCACAGGTCAACGTTTTTGGATGGTGGGACTGTATTGACCCTTCCGATTTTTTGTCTTCAAGGAGTTGTGCTCTTTCCTGGGGCTACCCTTCCCTTGAGAGTTATTGAATCCAATTTTGTGGCTGCTGTTGAGAAATCTTTGAGTCGAGTCGATGTTCCTTACACCATTGGTGTGATCCGAGTTTTCAGTGATACTGCAAATCGTAGGATGAAAACTGCAAGCATTGGGACGACTGCAGAGATTCGACAATACGGGCGCCTAGAGGATGGTTCGTTGAATGTGGTTACTCGTGGGCAACAACGCTTTCGCTTAAGACGGTGTTGGATCGATGTGGAAGGAGTGCCTTATGGAGAGATCCAAATTATTGAGGAAGACATACCATCGCGAACTCCAAGGGATGCTTTTGGAAAATTAACACCCCTAAGTAATCTTCCTTGCAACCGTGCCAGTGTGTTGCCTTCAAAGTATTCTGTTGATGGACAGGGTTCCTTAAACGAGGAAAGTGATACAGAAGAGAGCTTTGAGAATGAACTTTCATCTACAGAGAGAAGAATCCATCAATCACTCATTCGTTCCAGTTTTGAATATGATGAATCAGCAAGTAGTGGTGATGATAAATTCACATATGAGTCAGATCAGGAAATTAGATCCAATCTAAATACACCAGACACCTTAACACCATTGCTACCTGACCATGAAAAAGATGCAGAAAATCTGGATTCTAGGATTGGGAGCTGTTCCACTTCTGGAAAACAATCCTCCATCAGAGAAGGGCTTAATTGGTGTTCCAAAAATAGAGACCTCTACTCCTCACGTAGAACTTCAAGAGCATTCTTACCTGGTTGGGTATATCGTATGTTTGACTCCTATTTGCTTGCACAAAAGGCTGCAGATATGTGGAAGCAAATCGTTGGTGCACCAAGCATGGATGCTCTTGTTAAGAAGCCTGATGTTTTATCATTTTCTATTGCCAGTAAAATACCTGTTTCTGAATCTACAAGGCAGGAGCTTTTGGATATTGATGGGATCTCATATAGATTGCGTAGGGAAATTGAACTACTAGAAAGCATTGATCTAATTCGATGTAAAATCTGCCAGATTATAATTGCAAAGCGGAGTGATATGCTGGTGATGTCTAGTGAAGGTCCGGTTGGTGCATATGTAAATGCAACTGGTTATGTGCATGAGATAACGACTTTGTACAAGGCAAATGGATTAGCTCTAACTGGGCCAGCACTTACAAAATACAGTTGGTTTCCGGGGTATGCGTGGACAATCGCTAACTGTGCGACATGTGAAACCCATATGGGGTGGCTTTTTACAGCCACAAACAGAAAACTGAAACCTAAGTCATTTTGGGGTATACGTAACTGTCAAGTTGCAGATGAAACACATTAA 1671 0.4261 MEEEDNNRRRMMERERYERYQIEQILQLDLEELQVEEVDVFHDSSDDDNNNNNHANPIPGYGTAGVVPGEFTYNTCIASLHTYLGDVEDTHHRSTFLDGGTVLTLPIFCLQGVVLFPGATLPLRVIESNFVAAVEKSLSRVDVPYTIGVIRVFSDTANRRMKTASIGTTAEIRQYGRLEDGSLNVVTRGQQRFRLRRCWIDVEGVPYGEIQIIEEDIPSRTPRDAFGKLTPLSNLPCNRASVLPSKYSVDGQGSLNEESDTEESFENELSSTERRIHQSLIRSSFEYDESASSGDDKFTYESDQEIRSNLNTPDTLTPLLPDHEKDAENLDSRIGSCSTSGKQSSIREGLNWCSKNRDLYSSRRTSRAFLPGWVYRMFDSYLLAQKAADMWKQIVGAPSMDALVKKPDVLSFSIASKIPVSESTRQELLDIDGISYRLRREIELLESIDLIRCKICQIIIAKRSDMLVMSSEGPVGAYVNATGYVHEITTLYKANGLALTGPALTKYSWFPGYAWTIANCATCETHMGWLFTATNRKLKPKSFWGIRNCQVADETH* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0018 556 Coils Coil 255 275 - -
Mtr1g0018 556 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 451 542 IPR004910 -
Mtr1g0018 556 SMART lon_5 104 447 IPR003111 -
Mtr1g0018 556 ProSiteProfiles Lon N-terminal domain profile. 105 447 IPR003111 -
Mtr1g0018 556 MobiDBLite consensus disorder prediction 287 321 - -
Mtr1g0018 556 SUPERFAMILY PUA domain-like 104 446 IPR015947 -
Mtr1g0018 556 Pfam ATP-dependent protease La (LON) substrate-binding domain 104 446 IPR003111 -
Mtr1g0018 556 PANTHER BNAA09G40760D PROTEIN 12 551 - -
Mtr1g0018 556 Gene3D - 85 213 IPR046336 -
Mtr1g0018 556 ProSiteProfiles CULT domain profile. 448 555 IPR034750 -
Mtr1g0018 556 Gene3D Peptide methionine sulfoxide reductase. 444 556 - -
Mtr1g0018 556 MobiDBLite consensus disorder prediction 289 303 - -
Mtr1g0018 556 CDD CRBN_C_like 451 547 IPR034750 -
Mtr1g0018 556 PANTHER CEREBLON 12 551 - -
Mtr1g0018 556 MobiDBLite consensus disorder prediction 247 272 - -
Mtr1g0018 556 Gene3D - 379 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0018 Mtr-Chr1 242511 249992 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0018 K11793 - cit:102625906 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0018 1 242511 249992 Mtr1g0018 1 242511 249992 ECH