Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0588 ATGTTGAATCTTCTTCACCCACTTCATCTTCTTCCTCCATTAAAGCAACGACTTTTACCACCACCTTTTCACTCTCTCACCACCGTAATTCACTCGCCGCCGCCAACGCCGTCGCATGCGGTGGAAGACGACAACGACGACGACTTCGCAGTTGCCAAACTCATCCTCGAATCAGACACACAATCCCTACCTGAAACCCTAAAAAGAACAACTTTCCAATGGAATCCAAACCTAGTAGACAAAATCCTCAAACGCCTATGGAACCATGGACCCAAAGCCCTTCAATTTTTCAACTACCTTGAACGCAATCGAACCTATTCTCATTCTTCGTCATCATTTGATTACGCCATTGACATCGCGGCTCGTATGCGAGATTACAAGTCTGTGTGGGCCCTCGTTGCTCGTATGCGAGCTTGCCACGTAGGACCAAACCCTAGAACTTTCGCCATCATTACTGAGAGGTATGTTGCTGCTGGTAAAGCTGATAGAGCTGTGAAGATTTTCTTGTCAATGCATAAACATGGTTGCCGTCAGGATTTGAATTCTTTTAATACTATTCTTGATGTGTTGTGCAAGTCCAAAAGAGTGGAGATGGCTTATGATTTGTTCAAAGTTTTTAGAGGTAGATTTAAGGCTGATAGTGTTAGTTATAACGTTATTGTTAATGGTTGGTGCTTGATTAAGCGAACCCCCAAGGCGTTGGAGGTGATGAAGGAGATGGTAGAAAGAGGATTGACTCCAACTTTAACTACATATAATATATTGCTTAAAGGGTATTTCAGGACAGGTCAACTGAAGGAAGCTTGGGATTTCTTTTCAGAAATGAAGAAGAGGAAATGTGATATTGATGTTGTGACATATACCACCATGGTTCATGGTTTTGGTGTTGTGGGTGAAATTCAGAAAGCTAGGAAGGTTTTTGATCAGATGGTTAGGGAAGGTGTTCTTCCTTCAGTGGCAACATACAATGCTCTGATTCAAGTTTTATGTAAGAAGGATAGTGTGAATAATGCTATATTGGTATTTGAAGAGATGGTGAGAAAGGGTTATGTGCCTAATTCAGTTACTTACAATTTAATTATCAGAGGGTTGTGTCATACGGGTGATGTGCGAAGGGCCATGGAGTTTATGGTGAGAATGGAGGAGGAAGATGACTGTGAGCCAAATGTTCAGACATATAATGTCATGATACGATACTTCTGTGATGCTGGGGAGATTGAGAAGGGTTTAGACATGTTAGAGAAGATGAGGAGCAGGTCATGCTTGCCAAATCTAGACACTTATAACATTCTGATCAGTGACTTATTTGTGAGGAAGAAATCTGATGATTTAGTGGTAGCTGGGAAGTTGTTGATGGAAATGATTGATAGAGGCTTCCTGCCTCGAAAGTTTACTTTTAATCGAGTATTAAATGGGCTTTTGTTAACAGGCAATCAAGATTTTGCAAAAGAGATACTTAGATCACAAAGTAGTTGTGGCCGGGTTCCTCGACATCTGAAGCTCTGA 1506 0.415 MLNLLHPLHLLPPLKQRLLPPPFHSLTTVIHSPPPTPSHAVEDDNDDDFAVAKLILESDTQSLPETLKRTTFQWNPNLVDKILKRLWNHGPKALQFFNYLERNRTYSHSSSSFDYAIDIAARMRDYKSVWALVARMRACHVGPNPRTFAIITERYVAAGKADRAVKIFLSMHKHGCRQDLNSFNTILDVLCKSKRVEMAYDLFKVFRGRFKADSVSYNVIVNGWCLIKRTPKALEVMKEMVERGLTPTLTTYNILLKGYFRTGQLKEAWDFFSEMKKRKCDIDVVTYTTMVHGFGVVGEIQKARKVFDQMVREGVLPSVATYNALIQVLCKKDSVNNAILVFEEMVRKGYVPNSVTYNLIIRGLCHTGDVRRAMEFMVRMEEEDDCEPNVQTYNVMIRYFCDAGEIEKGLDMLEKMRSRSCLPNLDTYNILISDLFVRKKSDDLVVAGKLLMEMIDRGFLPRKFTFNRVLNGLLLTGNQDFAKEILRSQSSCGRVPRHLKL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0588 501 TIGRFAM PPR: pentatricopeptide repeat domain 355 390 IPR002885 -
Mibi13g0588 501 TIGRFAM PPR: pentatricopeptide repeat domain 182 204 IPR002885 -
Mibi13g0588 501 TIGRFAM PPR: pentatricopeptide repeat domain 392 424 IPR002885 -
Mibi13g0588 501 TIGRFAM PPR: pentatricopeptide repeat domain 285 318 IPR002885 -
Mibi13g0588 501 TIGRFAM PPR: pentatricopeptide repeat domain 215 248 IPR002885 -
Mibi13g0588 501 TIGRFAM PPR: pentatricopeptide repeat domain 251 283 IPR002885 -
Mibi13g0588 501 TIGRFAM PPR: pentatricopeptide repeat domain 321 353 IPR002885 -
Mibi13g0588 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Mibi13g0588 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Mibi13g0588 501 SUPERFAMILY HCP-like 178 312 - -
Mibi13g0588 501 Pfam PPR repeat family 248 294 IPR002885 -
Mibi13g0588 501 Pfam PPR repeat family 388 435 IPR002885 -
Mibi13g0588 501 Pfam PPR repeat family 317 366 IPR002885 -
Mibi13g0588 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Mibi13g0588 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Mibi13g0588 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Mibi13g0588 501 Pfam PPR repeat 215 245 IPR002885 -
Mibi13g0588 501 Pfam PPR repeat 182 204 IPR002885 -
Mibi13g0588 501 Pfam PPR repeat 155 176 IPR002885 -
Mibi13g0588 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 388 IPR002885 -
Mibi13g0588 501 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 209 489 - -
Mibi13g0588 501 Gene3D Tetratricopeptide repeat domain 87 228 IPR011990 GO:0005515
Mibi13g0588 501 Gene3D Tetratricopeptide repeat domain 229 383 IPR011990 GO:0005515
Mibi13g0588 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Mibi13g0588 501 Gene3D Tetratricopeptide repeat domain 384 500 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0588 Mibi-ChrMibi13 7677027 7678532 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0588 126 496 Glycosyltransferase AT1G05670 29.144 5.43e-48 175
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi13g0588 13 7677027 7678532 Mibi13g0588 13 7677027 7678532 ECH