Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g2040 ATGAATCGTATAATCCATGCAGTTTCGTCAAATCTCTTATTTTCTCTCGTCTTTCCGAGAAAAAACATGACCAGCTCTTCCGCTGCATCTCGCAAGGCTCTCAGTAAGATTGCCTGCAACAGGCTTCAGAAGGAACTTGTGGAGTGGCAAGTCAATCCTCCCGCCGGTTTCAAGCACAAAGTCACCGATAATCTCCAAAAGTGGGTTATTGAAGTGACTGGAGCTCCGGGTACACTTTACGCCAATGAAACCTACCAGCTTCAGGTCGACTTTCCTGAGCACTACCCCATGGAAGCTCCACAGGTCATATTTTTGCACCCTGCTCCACTCCATCCCCATATCTATAGCAATGGGCACATTTGTTTAGATATACTGTATGACTCATGGTCCCCGGCCATGACAGTTAGTTCGATCTGCATCAGCATTCTTTCAATGCTTTCAAGCTCAACTGTAAAGCAACGCCCTGAAGATAATGATCGCTATGTGAAGAACTGCAGAAATGGTAGATCTCCAAAGGAGACGAGGTGGTGGTTCCATGATGATAAAGTATAA 552 0.4565 MNRIIHAVSSNLLFSLVFPRKNMTSSSAASRKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQKWVIEVTGAPGTLYANETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g2040 183 Gene3D Ubiquitin Conjugating Enzyme 37 183 IPR016135 -
Mibi12g2040 183 FunFam probable ubiquitin-conjugating enzyme E2 16 35 183 - -
Mibi12g2040 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 37 183 IPR000608 -
Mibi12g2040 183 SUPERFAMILY UBC-like 24 148 IPR016135 -
Mibi12g2040 183 Pfam Ubiquitin-conjugating enzyme 41 176 IPR000608 -
Mibi12g2040 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 37 158 - -
Mibi12g2040 183 SMART ubc_7 40 183 - -
Mibi12g2040 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 110 125 IPR023313 -
Mibi12g2040 183 CDD UBCc 39 139 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g2040 Mibi-ChrMibi12 36812121 36815813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g2040 34 146 Miscellaneous Gene Families AT1G17280 28.814 8.86e-07 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g2040 12 36812121 36815813 Mibi12g2040 12 36812121 36815813 ECH