Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1966 ATGTGGCGGTGCGTTGCTCGTGGTCTTCGTAACAGATCCATTCCTAATGAGACTCTTCGATCTCACTTTTCTCGATTTTTCTCTACTGGGGGAAACTCCTCATACACTGTAGTTGACCATACTTATGATGCAGTCGTTGTAGGCGCCGGGGGCGCAGGGTTGAGAGCTGCTATTGGACTCTCCGAACATGGGTTCAACACTGCTTGCATTACCAAGCTTTTCCCAACTCGTTCCCATACTGTTGCAGCTCAGGGTGGTATAAATGCTGCACTGGGAAATATGACTGAGGATGACTGGAGGTGGCACATGTATGATACAGTCAAGGGAAGTGACTGGCTAGGAGATCAAGATGCCATCCAATATATGTGCAGAGAGGCACCAAAAGCTGTCATTGAGCTTGAGAATTATGGGTTACCATTTTCCCGAACTGAGGATGGAAGAATATACCAGCGTGCATTTGGTGGCCAAAGCCTGAACTTTGGAAAAGGTGGGCAGGCGTATCGTTGTGCATGTGCTGCTGATCGAACTGGACATGCTTTATTGCACACTCTCTATGGTCAAGCTATGAAGCATAATACTCAATTTTTTGTGGAATATTTTGCATTGGATCTTTTGATGGATAGTGATGGTAGTTGCCAAGGAGTGATTGCATTGAATTTGGAGGATGGAACATTACATCGGTTCCAAGCTGCTTCAACAATTTTGGCCACAGGAGGTTATGGTAGAACATACTTTTCTGCCACCTCAGCACATACATGCACTGGAGATGGTAATGCCATGGTTGCACGTGCAGGGCTCCCACTCCAGGATTTGGAGTTTGTGCAATTTCATCCAACAGGTATATATGGAGCCGGTTGCCTAATCACAGAAGGTTCTCGTGGAGAAGGTGGAATTCTAAGGAATAGTGAAGGTGAGCGATTCATGGAACGATATGCTCCTACTGCGAAGGATCTTGCATCAAGAGATGTTGTTTCGAGATCAATGACTATGGAGATCCGGGAAGGTCGTGGTGTAGGACCTTTGAAGGATCACATCTATCTACATTTAAATCACTTGCCCCCAGATGTGCTTAAGGAAAGGCTCCCTGGTATCTCTGAAACTGCTGCTATATTTGCTGGTGTGGATGTTACTAAGGAACCTATTCCTGTTTTGCCAACTGTCCACTATAATATGGGTGGTATTCCCACTAACCATCACGGAGAGGTGGTTACTATTAAAGGTGACAATCCAGATGCAATAGTACCAGGTCTGATGGCTGCTGGAGAAGCAGCCTGTGCATCGGTTCATGGTGCTAATAGGCTTGGTGCTAATTCTCTTCTGGACATCGTAGTTTTCGGTAGAGCTTGTGCAAATAGGGTTGCAGAAATTCAAAGGCCAGGTGCAAAACAGAAGCCTCTAGAGAAGGATGCTGGTCAAAAGACAATTGCATGGCTGGACAAACTGAGAAATTCAAATGGTTCATTGCCGACTTCAGATATTCGATTAAATATGCAACGAGTAATGCAAAATAATGCTGCTGTGTTCCGTACACAGGAAACATTAGAAGAAGGTTGTCAATTAATTGACAAAGCATGGGAGAGCTTTCATGATGTAAAGTTGAAGGACCGTAGTTTGATATGGAACACTGACTTGACTGAGACCCTTGAGTTGGAAAACCTTTTGATAAATGCCTGCATCACCATGCACTCGGCTGAAGCCAGGAAAGAGAGTAGAGGAGCACACGCCCGTGAGGACTTTACGAAAAGAGATGATGAGAACTGGATGAAGCACACATTAGGATATTGGGAGAATGAGAAGGTCCGCCTAGATTACAGGCCGGTGCACATGAGTACATTGGACGATGAGGTTGAATCATTCCCTCCAAAAGCTCGTGTGTATTAA 1881 0.4519 MWRCVARGLRNRSIPNETLRSHFSRFFSTGGNSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGRIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMDSDGSCQGVIALNLEDGTLHRFQAASTILATGGYGRTYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDNPDAIVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGAKQKPLEKDAGQKTIAWLDKLRNSNGSLPTSDIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLKDRSLIWNTDLTETLELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMSTLDDEVESFPPKARVY 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1966 626 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 385 450 - -
Mibi12g1966 626 Pfam FAD binding domain 43 439 IPR003953 -
Mibi12g1966 626 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 43 626 IPR014006 GO:0016627|GO:0022900|GO:0050660
Mibi12g1966 626 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 271 389 IPR027477 -
Mibi12g1966 626 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 578 626 - -
Mibi12g1966 626 SUPERFAMILY FAD/NAD(P)-binding domain 35 460 IPR036188 -
Mibi12g1966 626 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 31 626 IPR030664 -
Mibi12g1966 626 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 485 626 IPR037099 GO:0016491
Mibi12g1966 626 FunFam Succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 32 254 - -
Mibi12g1966 626 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 465 581 - -
Mibi12g1966 626 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 281 384 IPR027477 -
Mibi12g1966 626 Pfam Fumarate reductase flavoprotein C-term 495 626 IPR015939 GO:0016491
Mibi12g1966 626 PIRSF SDHA_APRA_LASPO 32 615 - -
Mibi12g1966 626 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 77 86 IPR003952 GO:0016491
Mibi12g1966 626 Gene3D - 466 576 - -
Mibi12g1966 626 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 40 626 IPR011281 GO:0006099|GO:0016627|GO:0050660
Mibi12g1966 626 Gene3D - 43 450 IPR036188 -
Mibi12g1966 626 Gene3D succinate dehydrogenase protein domain 577 626 - -
Mibi12g1966 626 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 281 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1966 Mibi-ChrMibi12 35930394 35936651 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1966 12 35930394 35936651 Mibi12g1966 12 35930394 35936651 ECH