Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1626 ATGGGCTGTTTCCACTCTACGGAAGGAAGGAAGAGAAATCCTCCTATGGGAGAGGACCCTTCAGTTCTTGCATCAGAGACAGCCTTCAGTGTTAGCGAGGTTGAAGCACTGTTTGAGCTTTTTAAGAGCATCAGCAGTTCAGTCGATGATGATGGATTGATCAGCAAGGAAGAGTTTCACTTGGCGATTTTTGACAATAGAAAAAAGGACAACCTCTTTGCCAGTCGGATCTTTGATATGTTTGATGTTAAGAAGAAGGGAACCATTGATTTTGGCGATTTTGTTAGATCACTCAGTGTCTTCCACCCTAAAGCATCACTACAAGACAAGATAGATTTTTCATTTAGGCTTTATGATTTGCACGATAATGGTTTTATTGAGCGCCAAGAGGTCAAACAAATGATAATTGCTCTTCTTTCAGAATCTGAGACGAAGTTGGCCGATGATGCAATAGAAAAAATTCTTGATAAAACTTTCTTGGACGCTGATATAAATCAAGATGGGAAAATAGACAAGTCTGAATGGGAAAACTTGGTTACCAAGAATCCATCGCTACTAAAAGTCATGACCCTACCCTACCTGAGGGACATAACAACCACCTTCCCAAGTTTTGTTTTTAATTCCAAGGTCGACGAAATTACAAAGTGA 648 0.3997 MGCFHSTEGRKRNPPMGEDPSVLASETAFSVSEVEALFELFKSISSSVDDDGLISKEEFHLAIFDNRKKDNLFASRIFDMFDVKKKGTIDFGDFVRSLSVFHPKASLQDKIDFSFRLYDLHDNGFIERQEVKQMIIALLSESETKLADDAIEKILDKTFLDADINQDGKIDKSEWENLVTKNPSLLKVMTLPYLRDITTTFPSFVFNSKVDEITK 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1626 215 FunFam calcineurin B-like protein 3 19 212 - -
Mibi12g1626 215 Pfam EF-hand domain pair 109 176 IPR002048 GO:0005509
Mibi12g1626 215 ProSiteProfiles EF-hand calcium-binding domain profile. 106 141 IPR002048 GO:0005509
Mibi12g1626 215 SUPERFAMILY EF-hand 21 205 IPR011992 -
Mibi12g1626 215 CDD EFh 110 175 IPR002048 GO:0005509
Mibi12g1626 215 ProSitePatterns EF-hand calcium-binding domain. 163 175 IPR018247 -
Mibi12g1626 215 ProSiteProfiles EF-hand calcium-binding domain profile. 150 185 IPR002048 GO:0005509
Mibi12g1626 215 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Mibi12g1626 215 SMART efh_1 73 101 IPR002048 GO:0005509
Mibi12g1626 215 SMART efh_1 154 182 IPR002048 GO:0005509
Mibi12g1626 215 SMART efh_1 110 138 IPR002048 GO:0005509
Mibi12g1626 215 PRINTS Recoverin family signature 124 142 - -
Mibi12g1626 215 PRINTS Recoverin family signature 170 190 - -
Mibi12g1626 215 PRINTS Recoverin family signature 77 98 - -
Mibi12g1626 215 Gene3D - 19 213 - -
Mibi12g1626 215 PANTHER CALCINEURIN B 1 212 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1626 Mibi-ChrMibi12 32173828 32176841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1626 1 214 EF-hand Containing Proteins AT4G17615 76.168 9.01e-116 327
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1626 12 32173828 32176841 Mibi10g0377 10 6069608 6072362 CCT
Mibi12g1626 12 32173828 32176841 Mibi12g1626 12 32173828 32176841 ECH