Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1381 ATGTCTTCTCCCAGTAAACGTCGAGAGATGGACTTGATGAAGCTGATGATGAGCGATTATAAGGTGGAGATGATCAATGATGGCATGCAGGAGTTTTATGTGCATTTCCATGGGCCTAAAGACAGTCATTATCATGAAGGTGTATGGAAGATTAGAGTAGAGCTTCCTGATGCTTATCCTTATAAATCTCCATCCATTGGTTTTGTCAATAAAATTTACCACCCTAATGTTGATGAAATGTCTGGCTCAGTTTGCTTAGATGTTATTAACCAGACCTGGAGTCCTATGTTTGACCTTGTTAATGTATTTGAAGTTTTTCTTCCCCAACTTCTGTTGTACCCCAACCCATCAGACCCATTAAATGGTGAAGCTGCTGCACTGATGATGCGTGATCGCACTGCATATGATCAAAAAGTCAAAGAATACTGTGAGAAATATGCCAAGCCAGAAGATGTTGGTGCTACACAGGAAGAAAAATCTAGTGATGAGGAGTTGAGTGAAGATGATTATGGCTCTAGTGATGATGGAATTGCAGGGCAACCTGATCCTTGA 552 0.4076 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPKDSHYHEGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQKVKEYCEKYAKPEDVGATQEEKSSDEELSEDDYGSSDDGIAGQPDP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1381 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Mibi12g1381 183 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Mibi12g1381 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
Mibi12g1381 183 MobiDBLite consensus disorder prediction 146 160 - -
Mibi12g1381 183 CDD UBCc 7 143 IPR000608 -
Mibi12g1381 183 FunFam Ubiquitin-conjugating enzyme 5, E2 1 159 - -
Mibi12g1381 183 SMART ubc_7 4 148 - -
Mibi12g1381 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Mibi12g1381 183 MobiDBLite consensus disorder prediction 146 183 - -
Mibi12g1381 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Mibi12g1381 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1381 Mibi-ChrMibi12 29488759 29490921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1381 3 150 Miscellaneous Gene Families AT3G17000 23.418 7.73e-06 43.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1381 12 29488759 29490921 Mibi12g1381 12 29488759 29490921 ECH