Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1377 ATGAGGGAATTTACCTTCAGAAGTCTCACATTTATGGTTTTGATTGCATTTCTGGTGTGGTCTTCCAATTTTGAAGCCTGCATTGCAAGAAGAGGCAAGCATTGGAGGCAAAACAGAGATGTGTCAGCTTCTCTGTACAAGAAGAAAGGAAAGAGTCATGGCAATAAACACAACAACAACCATGGAGGGGGACGATCACATTCAAAACCAAAGCCTCCATCATCATCCTCACCAAAAGCTCCTCCACATTATAAAATCACTCCATCACCATCAGCTTCACCGCCACCACTACCGCCATCACCATCAATTCCTAAGCCAAAGAGAGGTACTCCTTCAGCTTCACCACCAAAAGGTTACAATGTGGGTCATTCTACCACCTTCAATGTCCTAGATTTTGGAGCTAAGGGCGATGGAAAAACTGATGATACAAAGGCATTTGAAGCTGCATGGGCAGCTGCATGTAAGGTACAAGCATCAACTATGCTCATCCCAGCAGATTACGTCTTCTTTGTGGGACCCATTTCCTTCTCTGGTCCATACTGCAAACCCAACATAGTTTTTCAGCTTGATGGAACAATAATTGCCCCAACAAATCCCAATGCGTGGGGCAAGGGATTGTTGCAGTGGCTGGATTTCACAAAGCTTGTTGGAATTACCATTCAAGGAAAGGGAATCATTGATGGAAGGGGCTCAGTCTGGTGGCAAGACCGCCCATTTGATAATCCTATTGATGATGAAGAAAAACTCATAGTCCCACTAAACAACTCAGAGAAGAGGCCTCCAATGCCGGTTCAAAGTGAGCTGGGAGGGAAAATGCCATTCGTCAAGCCAACTGCACTAAGGTTTTATGGAAGTTTCAATCCAACAGTCACAGGCATAACAATTCAAAATAGTCAACAGTGTCACCTCAAGTTTGATAATTGCAATGGCGTCCTGGTCCATGATGTGAGCATTTCATCTCCTGGCGACAGTCCCAATACAGATGGAATTCACCTTCAGAATTCCAAAGATGTTTTGATTCACAGCAGCAAATTAGCTTGTGGGGATGACTGTATATCCATACAAACTGGATGCTCAAATGTATATGTGCACAATGTCAACTGTGGTCCAGGGCATGGAATCAGCATTGGAAGTTTAGGGAAGGATAATACAAGAGCCTGTGTCTCAAACATTACTATCAGAGATGTCAATATGCACAACACGATGAATGGTGTCAGAATCAAAACGTGGCAGGGTGGATCAGGCTCTGTACAGGGGGTCTTCTTCTCAAATATACAAGTTTCCGAAGTTCAACTCCCAATTGTGATAGACCAATACTATTGTGATAAAAGGACATGCAAAAACCAGACATCAGCCGTGGCTCTTCAAGGCATTAACTATGAAAGAATAAGGGGGACATACACAGTTAAGCCTGTGCATTTTGCCTGCAGTGATAGCCTGCCATGTGCAGATGTTACTTTAACCTCCATAGAGCTAAAACCACTTCAAGAACAATACCACCTATATGATCCATTCTGCTGGCAGACTTTTGGAGAATTAAGAACTCCAACAACTCCACCGATTGCTTGTCTGCAGATCGGGAAGCCATCAAGCAATCGGGTTCAGGTCGATCATGATCTGTGTTGA 1626 0.4379 MREFTFRSLTFMVLIAFLVWSSNFEACIARRGKHWRQNRDVSASLYKKKGKSHGNKHNNNHGGGRSHSKPKPPSSSSPKAPPHYKITPSPSASPPPLPPSPSIPKPKRGTPSASPPKGYNVGHSTTFNVLDFGAKGDGKTDDTKAFEAAWAAACKVQASTMLIPADYVFFVGPISFSGPYCKPNIVFQLDGTIIAPTNPNAWGKGLLQWLDFTKLVGITIQGKGIIDGRGSVWWQDRPFDNPIDDEEKLIVPLNNSEKRPPMPVQSELGGKMPFVKPTALRFYGSFNPTVTGITIQNSQQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKLACGDDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTWQGGSGSVQGVFFSNIQVSEVQLPIVIDQYYCDKRTCKNQTSAVALQGINYERIRGTYTVKPVHFACSDSLPCADVTLTSIELKPLQEQYHLYDPFCWQTFGELRTPTTPPIACLQIGKPSSNRVQVDHDLC 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1377 541 MobiDBLite consensus disorder prediction 74 111 - -
Mibi10g1377 541 MobiDBLite consensus disorder prediction 46 120 - -
Mibi10g1377 541 SUPERFAMILY Pectin lyase-like 124 535 IPR011050 -
Mibi10g1377 541 ProSitePatterns Polygalacturonase active site. 365 378 IPR000743 GO:0004650|GO:0005975
Mibi10g1377 541 Pfam Glycosyl hydrolases family 28 276 493 IPR000743 GO:0004650|GO:0005975
Mibi10g1377 541 Pfam Glycosyl hydrolases family 28 156 237 IPR000743 GO:0004650|GO:0005975
Mibi10g1377 541 FunFam polygalacturonase At1g48100 115 526 - -
Mibi10g1377 541 PANTHER - 125 510 - -
Mibi10g1377 541 MobiDBLite consensus disorder prediction 49 64 - -
Mibi10g1377 541 Gene3D - 119 532 IPR012334 -
Mibi10g1377 541 SMART pbh1 308 334 IPR006626 -
Mibi10g1377 541 SMART pbh1 358 378 IPR006626 -
Mibi10g1377 541 SMART pbh1 335 356 IPR006626 -
Mibi10g1377 541 SMART pbh1 388 409 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1377 Mibi-ChrMibi10 34417500 34421828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1377 2 541 Glycoside Hydrolase AT1G60590 65.867 0.0 708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi10g1377 10 34417500 34421828 Mibi10g1377 10 34417500 34421828 ECH