Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2404 ATGCCAGCTTCTCCCTCAGAAAACCGAACCAAATGGCGGAAGCGCAAGAGAGAACCCCAAATCAGCCGGCGCCAACAGAAGCACGAGGAGGAGGAGGACGACGAAGAGGAACCCAATGGTGAAGATGACCAACTCGAGCGGCAGGATGATTCTGAGGACCAAACCCAACACCCTAACCCCCAATCTGGTTCTAATTCTCAAGCGCAGCTCGAGATCGAGGTATTATCGGACGATGGAGTCCAAATTTCTCAGTTCCCTAGAGTGATCAAGCGCACTGTCAATCGCCCTCACGCATCAATCGCCGCAATTGTTGCTCTAGAGCGTGCCAATGAGTCTGGTGACCATAAGGGTCAGTTGCAGAATTCTCCATTTCTGGAGAATGTGTCCCACGGTCAGCTTCAGGCCCTTTCCACCGTGCCCTCCGATAGTTCAGCTTTGGATCAGGACCGTAATGAGGGAAGTAGTTCGTCTTATGTGATCACCCCACCTCCCGTACTGGAAGGCCGTGGCATTGTCAAGCGGTTTGGGAATAGGGTTCTGGTAGTTCCAATGCATTCAGAATGGTTTTCACCAGCTACAGTGCACCGGCTTGAGAGACAAGTGGTGCCACGTTTTTTCTCTGGAAAATCACCGGATCATACCCCAGAGAAGTACATGGAATGTAGAAATTTTATAGTTTCAAGATACATGGAAGACCTGGGGAAGAAGATTACAATTTCTGATTGCCAAGGATTGTTAGTTGGGGTTGATAACGAAGATTTAACTCGAATTTTCCGGTTCCTTGATCATTGGGGAATCATCAACTACTGTGCTCAGGTACCAAGTCACAAGCCTTGGAATGAGGAGTCTTACCTGAAGGATGAGGCAAGCGGTGAGATTCGTGTGCCGTTAGATGCCTTAAAATCTATGGATAGTTTGATCAAATTCGACAAGCCGAAGTGTAAACTCAAAGCAGACGAAATTCATTCATCATTGACATCTCAGAATGCTGATATTACTGATTTGGAGGACAGAATAAGAGAGCATTTATCTGAAAATCATTGCAACTGCTGTTCTTGTCCTCTTCCTGCTGTTTTCTATCAGTCACAAAAAGAGGCTGATATTCTTCTCTGTATCGATTGTTTCCACGATGGAAAAATTGTCGTCGGTCATTCAAGTTTAGATTTTATAAGAGTTGATTCAACAAGAGATTATGGTGATCTAGACGGGGATAGTTGGACTGATCAAGAAACCTTGCTGTTGCTTGAGGCAATGGAGATTTACAATGAGAATTGGAATGAAATTGCTGAGCATGTCGGTACCAAGTCAAAAGCACAGTGTATTCTCCATTTCCTCCGTCTTCCTATGGAAGAAGGAAAACTGGAAAATATTAATGTTCCAAGATTGTCATTGTCATCAAATATGTCAAATAGCGATGATTGTGAAAGACAGCGCTCAAATGTAGATGCAGATATAGCAGGACCGACTCAGAGCAGTGATCCGAACAGCAGGCTCCCCTTTTCAAATTCTGAGAATCCTGTTATGGCTCTGGTTGCCTTTTTGGCCTCTGCTTTTGGACCTAGAGTAGCTGCTGCTTGTGCGCATGCTTCATTAGCAGAATTGTCGGAGAATAATTCCGGTAGTATGTCACAGAAAGAAGCGCCAGGGTATAGTAACAGGATGAACTTTGAAAGCACACATATTAAAGATGGCGGTCTTCTTGGAGAAATTGCAAACCCAAATCAGCAAGATGAGGATGAGGCAAAAGCGCTTGGTTCACAGGGTCCAAATGAGAGTGAGGTTGTCCCTCTATCTGCTGAGAAAGTTAAAGATGCTGCTAAGGCAGGCTTGTCTGCTGCAGCAATGAAAGCTAAACAATTTGCAGAGTATGAGGAAAGAGAAATTCAGAGGCTATGTGTTAGTATTATCACCCATCAGGTGAGAAGATTGGAATTGAAGATCAAGCAGTTTGCTGAACTTGAAGCCCTGTTGACGAAAGAGTGTGAACAAATGGATAAGACAAGACAAAGGATTGCGGCTGAACGTTCTCGTCTTTTATCAGCATGGCTTGGATCTGGTGTGGCCACAAGCTCATCAGGTGTTGATCCTTCTTCAGTTAGCAACAATAATGGCACCAGTAGACAACAAATGGCCTTTGGATCTCCTTCACAGCCTAGTGTTTCAGGATACACAAGTGGCCAACCAGTTCATCCACACATGTCCTTTGTCCCACGGCCTTCCATGTTTGGTGGGTTAGGGCAAAGGTTACCACTTTCTATGATACAGCAATCACAATCAACTTCCCCAAATCCCATGTTTAAAGGCCCGGGTAATGTGCAGCCTTCTACCAATCACCCATTGTTGAGGCCTGTATCAGGTACTAACTCTGGTTTAGGTTAA 2379 0.4498 MPASPSENRTKWRKRKREPQISRRQQKHEEEEDDEEEPNGEDDQLERQDDSEDQTQHPNPQSGSNSQAQLEIEVLSDDGVQISQFPRVIKRTVNRPHASIAAIVALERANESGDHKGQLQNSPFLENVSHGQLQALSTVPSDSSALDQDRNEGSSSSYVITPPPVLEGRGIVKRFGNRVLVVPMHSEWFSPATVHRLERQVVPRFFSGKSPDHTPEKYMECRNFIVSRYMEDLGKKITISDCQGLLVGVDNEDLTRIFRFLDHWGIINYCAQVPSHKPWNEESYLKDEASGEIRVPLDALKSMDSLIKFDKPKCKLKADEIHSSLTSQNADITDLEDRIREHLSENHCNCCSCPLPAVFYQSQKEADILLCIDCFHDGKIVVGHSSLDFIRVDSTRDYGDLDGDSWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEEGKLENINVPRLSLSSNMSNSDDCERQRSNVDADIAGPTQSSDPNSRLPFSNSENPVMALVAFLASAFGPRVAAACAHASLAELSENNSGSMSQKEAPGYSNRMNFESTHIKDGGLLGEIANPNQQDEDEAKALGSQGPNESEVVPLSAEKVKDAAKAGLSAAAMKAKQFAEYEEREIQRLCVSIITHQVRRLELKIKQFAELEALLTKECEQMDKTRQRIAAERSRLLSAWLGSGVATSSSGVDPSSVSNNNGTSRQQMAFGSPSQPSVSGYTSGQPVHPHMSFVPRPSMFGGLGQRLPLSMIQQSQSTSPNPMFKGPGNVQPSTNHPLLRPVSGTNSGLG 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2404 792 MobiDBLite consensus disorder prediction 465 500 - -
Mibi08g2404 792 MobiDBLite consensus disorder prediction 1 67 - -
Mibi08g2404 792 Gene3D - 402 452 - -
Mibi08g2404 792 MobiDBLite consensus disorder prediction 31 49 - -
Mibi08g2404 792 CDD SANT 405 447 IPR001005 -
Mibi08g2404 792 Gene3D - 186 273 IPR036388 -
Mibi08g2404 792 FunFam SWI/SNF complex subunit SMARCC2 isoform c 186 274 - -
Mibi08g2404 792 Pfam Myb-like DNA-binding domain 405 447 IPR001005 -
Mibi08g2404 792 ProSiteProfiles SWIRM domain profile. 180 278 IPR007526 GO:0005515
Mibi08g2404 792 Coils Coil 325 345 - -
Mibi08g2404 792 MobiDBLite consensus disorder prediction 687 727 - -
Mibi08g2404 792 MobiDBLite consensus disorder prediction 483 500 - -
Mibi08g2404 792 Pfam SWIRM-associated region 1 608 678 IPR032451 -
Mibi08g2404 792 FunFam SWI/SNF complex subunit SMARCC2 isoform C 402 452 - -
Mibi08g2404 792 PANTHER SWI/SNF COMPLEX-RELATED 326 680 - -
Mibi08g2404 792 SMART sant 402 450 IPR001005 -
Mibi08g2404 792 Pfam SWIRM domain 183 269 IPR007526 GO:0005515
Mibi08g2404 792 ProSiteProfiles Zinc finger ZZ-type profile. 342 397 IPR000433 GO:0008270
Mibi08g2404 792 ProSiteProfiles Myb-like domain profile. 398 448 IPR001005 -
Mibi08g2404 792 MobiDBLite consensus disorder prediction 139 160 - -
Mibi08g2404 792 SUPERFAMILY Homeodomain-like 179 272 IPR009057 -
Mibi08g2404 792 ProSiteProfiles SANT domain profile. 401 452 IPR017884 -
Mibi08g2404 792 SUPERFAMILY Homeodomain-like 403 456 IPR009057 -
Mibi08g2404 792 MobiDBLite consensus disorder prediction 754 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2404 Mibi-ChrMibi08 41781940 41787458 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2404 348 444 EF-hand Containing Proteins AT3G07740 33.019 6.10e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g2404 08 41781940 41787458 Mibi08g2404 08 41781940 41787458 ECH