Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2290 ATGTTCCAGACATCTGAGAAAAACATGAGCAACGTCGCTGAGAACAACAACATGAAGGGAGACGAAGTGTTGGGAACGTGGTGGAATAACGGAGTACTTCCAAACGCACCATTCCCCAATCTCCACCATTGCCATCCTTACAATGAGCATCTGGCGATTAACTCACCTGGATGGACTGTCCCTCACTCATCATCACATTCTCCCTCGTTAACCTCTTTCGCTGACGGCCTTCATGTTCCTTCTCCATACACAGCTTCGTTTCAGGACAGGAAGCAACTAACACAACACGATCAACACTCGACTAATAAAGTGTTGTTGGAATCCGGGTCGTCTGATTTCCTTATTGGGACGAGTGTCTTTGATAATCAAGTGGTTGATCTGGACCTGTCTCGTGATTTCTATAGAATGAACATTAACGGACAGGGAAATGGTAACAATGAAACAAAGGCACCAGAAGCGGACTCTTTCGGATTTGGATTTGACGGTTTCTCTTTGGATATGAATATGAATATGAATATTCCCAACGGCGTTAATCAAACACGGAGCTTCTATGACAAATTTTGCAATGGAGTTCCCGCACCTGACCATCTTGACTGTATCTCATCGCCTACGTGGGGAGTTTCACCTGCTATGAAGTGGCCTAACCATACCTCGGAGAAAGGATACACTTCTTCCCTCGCACATGGTCAATCCAGTGGTTTGAATTTGTGCTCTGGTTGGAACATGAACCAAGCATATCACCAATTGGAGCACATTGTGAAACAGGGGACTAGTAGCTATGATGGTTTCACTGGCTCACAAATTTGTGGACTGGATTATGATGGAACCTGGGCTGTTAAAAACCCCTTAGGATTCTCTCAAATTATGCACCCTAAGCTAGCGTCACTTCAGGATACAGACGAGAAAACAAGGGGAATTGCTAGCTTTGAGGTGCCTCCTGAATTTCTCACGTCTGAAAGAGCTGGTGGCGATCCAGTGGCGTTTCAATGTGATAATAGTTTTATCATACAAGGAAAAGATATAAATTATTGCACAGACAAAGGATACAGTTCTTTGAGGGGTAACAAAAAGAATTCCTTCAATGAGGGTGCATTGGAAACTGCAGGGGAGAAAGCTTCTAAGCACATTTCTTATACTCCTGGCAGTCAAATTTGTGGAAATAATGGCAGTCTTTTTGATGATTTCCCACTGCACTCACAACTTAATTTCTGTTCCTTGGCTGAGTGCCAGGGTTACATCAACCTTCTGGCAAAGGATCAGAATGGATGTCGCTTCCTACAAAGGATGGTTGATAAGGGGAACTCTAAGGAGATGCTTATAGTTTTTGAGGGGATCATAGATAATGTTGTTGAACTCATGATGGACCCTTTTGGTAATTATCTTGTGCAGAAGTTGCTGGATGTGTGTGGAGAAGAGCAGAAATTGCAGATTGTGTCCATGGTGACTAAAGAACCAGGGCAGCTCGTCAGAATATCCTTAAACACGCATGGCACACGGGTCATACAGAAGCTGATTGAGACACTCAACTCGAGGAAACAAATTTCATTAGTGAAGTCAGCCCTTCAAGCAGGTTTTCTCGATCTTATTAAGGATCTGAATGGAAATCATGTGATACAACGTTGCTTGCAATGCCTTAGCAGTCAAGATAATGAGTTTATTTTTCATGCTGCCGCAAAGTTTTGTGTCGACATTGCTACTCATCAACATGGATGTTGTGTATTGCAACGTTGTATTGACCATTCAATCGGCAAACATCGAGATAAGCTGGTCACAGAAATATGTAGACACGGGCTTCTCCTTGCTCAAGATCCTTACGGAAACTATGTTGTCCAGTATATAATAGAGATGGAGATCCCAACTGCCTCGGCCAAGCTGTGTTCTCAGTTCAAAGGGAACTATGTAAATCTGTCTACGCAAAAATTTAGCAGTCATGTGGTTGAAAAATGCCTTAAGCATGCTGGAGAGAGCAGATCAAGGATCGTCCGAGAATTGCTGTCTTCACCTCACTTCGAACAGTTATTGCAAGATCCATTTGCCAACTATGTCATTCAGTCTGCTCTTGCTGTGACAAAGGGTTCACTTCATACATCTTTGGTTGAAGCAGTTCGTCCTCACAAATTCTTGCGCACCAGCCCGTATTGCAAGAGGATTTTCTCGGGAAGTCTGCTCAAGAAGTAA 2178 0.4339 MFQTSEKNMSNVAENNNMKGDEVLGTWWNNGVLPNAPFPNLHHCHPYNEHLAINSPGWTVPHSSSHSPSLTSFADGLHVPSPYTASFQDRKQLTQHDQHSTNKVLLESGSSDFLIGTSVFDNQVVDLDLSRDFYRMNINGQGNGNNETKAPEADSFGFGFDGFSLDMNMNMNIPNGVNQTRSFYDKFCNGVPAPDHLDCISSPTWGVSPAMKWPNHTSEKGYTSSLAHGQSSGLNLCSGWNMNQAYHQLEHIVKQGTSSYDGFTGSQICGLDYDGTWAVKNPLGFSQIMHPKLASLQDTDEKTRGIASFEVPPEFLTSERAGGDPVAFQCDNSFIIQGKDINYCTDKGYSSLRGNKKNSFNEGALETAGEKASKHISYTPGSQICGNNGSLFDDFPLHSQLNFCSLAECQGYINLLAKDQNGCRFLQRMVDKGNSKEMLIVFEGIIDNVVELMMDPFGNYLVQKLLDVCGEEQKLQIVSMVTKEPGQLVRISLNTHGTRVIQKLIETLNSRKQISLVKSALQAGFLDLIKDLNGNHVIQRCLQCLSSQDNEFIFHAAAKFCVDIATHQHGCCVLQRCIDHSIGKHRDKLVTEICRHGLLLAQDPYGNYVVQYIIEMEIPTASAKLCSQFKGNYVNLSTQKFSSHVVEKCLKHAGESRSRIVRELLSSPHFEQLLQDPFANYVIQSALAVTKGSLHTSLVEAVRPHKFLRTSPYCKRIFSGSLLKK 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2290 725 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 182 718 - -
Mibi08g2290 725 Gene3D - 390 722 IPR011989 -
Mibi08g2290 725 ProSiteProfiles Pumilio RNA-binding repeat profile. 628 666 IPR001313 GO:0003723
Mibi08g2290 725 ProSiteProfiles Pumilio RNA-binding repeat profile. 405 443 IPR001313 GO:0003723
Mibi08g2290 725 ProSiteProfiles Pumilio RNA-binding repeat profile. 592 627 IPR001313 GO:0003723
Mibi08g2290 725 ProSiteProfiles Pumilio RNA-binding repeat profile. 444 479 IPR001313 GO:0003723
Mibi08g2290 725 SMART pum_5 556 591 IPR001313 GO:0003723
Mibi08g2290 725 SMART pum_5 444 479 IPR001313 GO:0003723
Mibi08g2290 725 SMART pum_5 483 518 IPR001313 GO:0003723
Mibi08g2290 725 SMART pum_5 408 443 IPR001313 GO:0003723
Mibi08g2290 725 SMART pum_5 628 662 IPR001313 GO:0003723
Mibi08g2290 725 SMART pum_5 665 700 IPR001313 GO:0003723
Mibi08g2290 725 SMART pum_5 520 555 IPR001313 GO:0003723
Mibi08g2290 725 SMART pum_5 592 627 IPR001313 GO:0003723
Mibi08g2290 725 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 387 725 IPR033133 GO:0003723
Mibi08g2290 725 ProSiteProfiles Pumilio RNA-binding repeat profile. 480 518 IPR001313 GO:0003723
Mibi08g2290 725 ProSiteProfiles Pumilio RNA-binding repeat profile. 556 591 IPR001313 GO:0003723
Mibi08g2290 725 SUPERFAMILY ARM repeat 406 718 IPR016024 -
Mibi08g2290 725 FunFam Pumilio homolog 9 397 725 - -
Mibi08g2290 725 Pfam Pumilio-family RNA binding repeat 525 555 IPR001313 GO:0003723
Mibi08g2290 725 Pfam Pumilio-family RNA binding repeat 599 615 IPR001313 GO:0003723
Mibi08g2290 725 Pfam Pumilio-family RNA binding repeat 669 687 IPR001313 GO:0003723
Mibi08g2290 725 Pfam Pumilio-family RNA binding repeat 487 511 IPR001313 GO:0003723
Mibi08g2290 725 Pfam Pumilio-family RNA binding repeat 632 665 IPR001313 GO:0003723
Mibi08g2290 725 Pfam Pumilio-family RNA binding repeat 448 480 IPR001313 GO:0003723
Mibi08g2290 725 Pfam Pumilio-family RNA binding repeat 415 445 IPR001313 GO:0003723
Mibi08g2290 725 Pfam Pumilio-family RNA binding repeat 561 594 IPR001313 GO:0003723
Mibi08g2290 725 ProSiteProfiles Pumilio RNA-binding repeat profile. 520 555 IPR001313 GO:0003723
Mibi08g2290 725 CDD Pumilio 409 719 IPR033712 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2290 Mibi-ChrMibi08 40618564 40622766 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g2290 08 40618564 40622766 Mibi08g2290 08 40618564 40622766 ECH