Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2098 ATGGCGACACCATCGTTGGATGAAGAAACCTCCAAGAAAGTTGAGTTCTACTTTAGTGACAGCAATCTTCCCAGGGACAATTTTCTCAAGAAATGCATTGATGAAAGTGAAGATGACATGGTTAGTTTGGCTTTGATTTGTTCTTTTACTCGGATGAGAAAACATCTTAATCTGGACGATGTAAAGCCGGATGAAGTTCCCGAAGATACTGTGAAAGCTGTTGCTGAAACTTTGAGGAAATCTGAATCCCTTAAGATCTCCGAGGATGGGAAAAAAGTTGGCAGGACAACTGAACTTCTTAAACCAGAAGAGGTAATTGAGCAGGTGGACACCAGAACAATAGCTGCTGAACCATTTGAATATGATGTGAAGCGAGAAGATGTAGAGGCATTCTTTGGTCAAATTGCCAAGGTTAATAGTGTTAGGCTTCCTCGTCATGTTGGAGACAAAAAGTTCTTCTGTGGTACTGCTCTCATTGAGTTTGCAGCAGAAGAAGATGTTGGGAAAGTTTTGGGGCAAAAGTTGGTCTATGCGGGAGCCGAGTTAGAATTGAAGTTAAAGAAAGACTTTGATAAAGAGAGAGCAAAGGAGTTAGAAGGGTATGAAAAGTCTGGTGCGCGTATGGGTTCAGAAGATCACCAGAACAACTCAAATGCTGAAGCAAGCTACCCCAAGGGCTTAATCATTTCCTTCAAGCTAAAACGCATTTCAGATGATGTTCCTGTGGCACAAAATGGTGGTCATCAAGAAGCCAGTGGTGTCTCTGACAAAGAAGAACAAAATCCCTCAGAAGGTGTTGTTGAGGTTAATGAACAAAAGGTATCAGATAATACTGTCAATGATAAAAAACACCAAGAGGCCAGTGAAGAAAATGAAACTAAAGGTGAAGAAAAGATTCAAGATAGTGAAGTAAAACTTTCAGCCAGTGCCTGCAAGGACAACATGGACGTTGTGTTACGTGAGGATTTGAAGGTTGTATTTGAGAAGTTTGGTTGTGTGAAGTTCATTGATTTCAAGATTGGAGATGATTCAGGATTTATCCGGTTCGATGAACCCGAAGCTGCTCAAAAAGCTCGTGCGGCCGCGGTTCTCGCTGAAAAGGGGGGTTTGACTGTGAAGAATTTTATCGCTACTCTAGATCCAGTGTCTGGTAGCGATGCTGAGAGGGAATACTGGAGCCTTCTCCGTGGTAATCAAGAAAAACATAGAGACAATAGGAACACCCGAGGAAGGGGAGGAGGATGGCGTGGTAGAGGGGGAAAACATTTCCGCTCTAGAGGGAACGACTCTGCATCAGGTCGCCCAAACAAAGCTCAGAGAGTTGGGGCAGCTTAA 1335 0.4315 MATPSLDEETSKKVEFYFSDSNLPRDNFLKKCIDESEDDMVSLALICSFTRMRKHLNLDDVKPDEVPEDTVKAVAETLRKSESLKISEDGKKVGRTTELLKPEEVIEQVDTRTIAAEPFEYDVKREDVEAFFGQIAKVNSVRLPRHVGDKKFFCGTALIEFAAEEDVGKVLGQKLVYAGAELELKLKKDFDKERAKELEGYEKSGARMGSEDHQNNSNAEASYPKGLIISFKLKRISDDVPVAQNGGHQEASGVSDKEEQNPSEGVVEVNEQKVSDNTVNDKKHQEASEENETKGEEKIQDSEVKLSASACKDNMDVVLREDLKVVFEKFGCVKFIDFKIGDDSGFIRFDEPEAAQKARAAAVLAEKGGLTVKNFIATLDPVSGSDAEREYWSLLRGNQEKHRDNRNTRGRGGGWRGRGGKHFRSRGNDSASGRPNKAQRVGAA 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2098 444 Gene3D - 5 102 IPR036388 -
Mibi08g2098 444 ProSiteProfiles xRRM domain profile. 297 424 IPR014886 GO:0003723
Mibi08g2098 444 PANTHER LUPUS LA PROTEIN-RELATED 12 301 IPR045180 -
Mibi08g2098 444 Pfam RNA binding motif 318 411 IPR014886 GO:0003723
Mibi08g2098 444 SMART la 4 96 IPR006630 -
Mibi08g2098 444 MobiDBLite consensus disorder prediction 242 301 - -
Mibi08g2098 444 Gene3D - 103 196 IPR012677 -
Mibi08g2098 444 CDD LA_like_plant 12 95 - -
Mibi08g2098 444 Pfam La domain 12 80 IPR006630 -
Mibi08g2098 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 171 IPR000504 GO:0003723
Mibi08g2098 444 MobiDBLite consensus disorder prediction 275 301 - -
Mibi08g2098 444 MobiDBLite consensus disorder prediction 201 221 - -
Mibi08g2098 444 MobiDBLite consensus disorder prediction 399 444 - -
Mibi08g2098 444 PRINTS Lupus La protein signature 13 30 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mibi08g2098 444 PRINTS Lupus La protein signature 39 54 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mibi08g2098 444 PRINTS Lupus La protein signature 153 171 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mibi08g2098 444 SUPERFAMILY "Winged helix" DNA-binding domain 5 98 IPR036390 -
Mibi08g2098 444 ProSiteProfiles La-type HTH domain profile. 1 105 IPR006630 -
Mibi08g2098 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Mibi08g2098 444 Gene3D - 304 411 IPR012677 -
Mibi08g2098 444 SUPERFAMILY RNA-binding domain, RBD 320 403 IPR035979 GO:0003676
Mibi08g2098 444 SUPERFAMILY RNA-binding domain, RBD 103 189 IPR035979 GO:0003676
Mibi08g2098 444 FunFam La protein 2 6 102 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g2098 08 38411095 38414602 Mibi08g2098 08 38411095 38414602 ECH