Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2088 ATGGCGTCAGCTTGTAGGGTTTTATTATCAGTGAGGAAGAGGTTCGCTTGTAGGTTCAACTTTCTCGCACTTCCTTCAAGCTCTCACCATTTGAATTTCCACAATGAATCGAGTTCAAACCCCTTGCTTCTCAAATTACTACGGGTTTCAGATTCGCGCCTTAGGCCTACGTTGGATCAGGAATTTTGTTCCCTTAAAAGTTCCAATTTTTCTTGGGAATCTCTGGTTACCTGTCTTCGGTCTTCTTCTCCTGAAAAAGCTCGGCTGGCTTTGGAATGGGTTTTGGAGAAATTGCTGAAAGAAAAAGAGAGAGATCACTGTGCCTTCTCTGATTATATATTTCTTTGCGGCAAGCTTCAGAATGTGCCACTCGCAATGCAAGCGTTTGCTTCTATGGAGGCTAATGGAGTTAAACCCACCTCCCTGGTCTTTAATTCCCTCATAAATGCTTGCTTGTGTTCCAATGACATTATTGCAGCATTTAGCTTATTTGAGGTCATGGAAAGTTCAGAGAGCTATAAACCTGATTTTCATACTTATAATACGTTTATCAAGGCATTTTCAATATCAGGGAACGTTGATGCCATGTTAGCTTGGTACTCAGCTAAGAAAGCTGCTGGATTTGGTCCTGATCTTCAAACATTCGAATCCCTTATATCAGGTTGTATCAAATCAAGAAATTTTGAACTTGCTGATGGGATTTATGAAGAAATGTTGTCATCAGGAATTATACCTAGCGTATCCATTCTGGAAAATATGCTTGAAGGGCTTTGCAAACAAAAGAGTTTGAGTCGAGCTGAGGAGTTCTTCAAGTTTGTGGTTGGTGCCAGATGGGAGATCAATGAAAACATGACTGATAAATTAATGGCACTGTATCAAGAAGTTGGACGAGTGGGAAGTATGGAGAAGCTGCTTGAAACTATGATGAAGTCCAATCATATTACCAATGGAGTCCTCTCCCGAATTCACTGTGGGATTATACGAATGTATGCCAAACTGGATAGCTTGGATGACGTAGAATTTGCTGTGGGAAGAATGTTGAAACAAGGGCTATTATTCACAAGTATAGATGATGTTGAAAAGGTTATATGCTCATACTTCAGAAGAGAAGCTTATGATAGGCTAGACATATTCTTGGAATTCATAGGGACTAGCTATACGCTAAGCAGATCTACTTATGATTTGTTGATATCTGGCTATAGAAGAGCTAGATTACACCAGAAAGTAGATTCAATGATCGAAGCCATGAAATCAGCTGGGGTTACGTAG 1269 0.4011 MASACRVLLSVRKRFACRFNFLALPSSSHHLNFHNESSSNPLLLKLLRVSDSRLRPTLDQEFCSLKSSNFSWESLVTCLRSSSPEKARLALEWVLEKLLKEKERDHCAFSDYIFLCGKLQNVPLAMQAFASMEANGVKPTSLVFNSLINACLCSNDIIAAFSLFEVMESSESYKPDFHTYNTFIKAFSISGNVDAMLAWYSAKKAAGFGPDLQTFESLISGCIKSRNFELADGIYEEMLSSGIIPSVSILENMLEGLCKQKSLSRAEEFFKFVVGARWEINENMTDKLMALYQEVGRVGSMEKLLETMMKSNHITNGVLSRIHCGIIRMYAKLDSLDDVEFAVGRMLKQGLLFTSIDDVEKVICSYFRREAYDRLDIFLEFIGTSYTLSRSTYDLLISGYRRARLHQKVDSMIEAMKSAGVT 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2088 422 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Mibi08g2088 422 Pfam PPR repeat family 139 187 IPR002885 -
Mibi08g2088 422 PANTHER EXPRESSED PROTEIN 34 421 IPR044179 GO:0003729
Mibi08g2088 422 Gene3D Tetratricopeptide repeat domain 57 156 IPR011990 GO:0005515
Mibi08g2088 422 Gene3D Tetratricopeptide repeat domain 157 271 IPR011990 GO:0005515
Mibi08g2088 422 Pfam PPR repeat 391 421 IPR002885 -
Mibi08g2088 422 Pfam PPR repeat 214 243 IPR002885 -
Mibi08g2088 422 TIGRFAM PPR: pentatricopeptide repeat domain 214 246 IPR002885 -
Mibi08g2088 422 TIGRFAM PPR: pentatricopeptide repeat domain 143 176 IPR002885 -
Mibi08g2088 422 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 422 IPR002885 -
Mibi08g2088 422 Gene3D Tetratricopeptide repeat domain 272 422 IPR011990 GO:0005515
Mibi08g2088 422 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2088 96 421 Glycosyltransferase AT1G05670 19.018 1.78e-12 67.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g2088 08 38316699 38318374 Mibi08g2088 08 38316699 38318374 ECH