Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2042 ATGCTCGAAACTCACATTCTCTCACACTTCAATCTACTTCAATCTAACTCAAAGCCGATTTCTTCCTTTCTTATCACGTCTTCTTCTTCCTCTTCCTTTTCTCCAATTCGGCGTCGCTTGAAGAGCGCTGCTAATCCGCTTACAAGGAACCTTAAGTGTCTTACTTCACGCATCGTACAACTCACCCGACGAAGGCAGCTTCACCAGGTCCTCTTTTCTCATCTAATCTTCTTCTATGTTGCTACTAGCTGCTGTTCTCTGCTTCGATTGCGGTTCTTAGGTTTGGTTTGGGGGATGTTAGCGCTCACTTTTGATGGTTTTCTTCCTCAGATTCTTGAAGAGATTGAAATTGCCAAGAAACGTTATGGGAGGCTGAACACTATTGTCATGAACGCTGTCGTGGAAGCATGTGTTCATTGCGGTGATATTGATTCAGCTCTTAGGATATTTAATGAGATGACAAAACCTGGGAGCTGTGGCGTGGATACTGTCACGTACTCTACGCTTTTGAAGGGATTAGGCGAGTTGCGGAAGGTCGATGAAGCATTTCAATTGCTTGAATCCGTGGAAAAAGGTACCGCACCTGGAAATCCAAAGCTGTCAGCCTCATTGATCTTTGGTCTGCTTAATGCCATAATCGAAGCAGGTGAGTCAGAAGGAGACTTACGTCGTGCAAATGGCCTCCTTGCTCGTTATGGTCATGTACTTCGTGAAGGTGGCAAATTCTCAGTCTCAGTATACAATGTACTCATAAAGGGGTATATCACCGCAGGTTTTCCTCGAGATGCTGTAAACTTGCACAATGAAATGCTACGTCATGGAATGAAGCCTGACAGGCTCACCTACAACACTCTCATATTAGCATGTGTCAAGAGTCAAAACGTGGATACTGCAGTGCAGTTTTATGAAAACATGAAGGATGAAGCACAGAAATCTACCCACAATGATGTTTTGCCAGATATTGTCACATACACAACACTGCTCAAGGGTCTTGGGCATGCGAAAGATCTCTCGTCAGTCCTGAAAATAGTGCTGGAAATGAAATCATGCCAGGAATTGTATATTGATCGGACAGCTTACACTGCAATTGTTGATGCTTTATTAAACTGTGGCTCAATTAAGGGTGCTCAATGCATCTTTGGAGAAATACTGAAGCTGGCTGGTTGGAATCCAGAGTTGAGGCCCAAGCCTCACCTTTATCTTTCCATGATGCGTGCTTTTGCTTCTAGAGGAGATTATAATGTTGTCAAAAAATTGCATAGGCGGCTTTTGCCAGATTCTGCAGGAACCATCTTGCCAGTTGCCCAAGAAGAAGCTGATCATCTTCTCATGGAAGCAGCACTGAATAGTGGTCAGGTTGATGTTGCCGTTGAAACTCTTATTAATATTGCTTCAAAGTGGAAGGGTATACCATGGACAAGTCGTGGAGGCATGGTGACTTTGCGCATAGAGGCCACATTGGGATTTTCAAAATCCATATTCAGTCCCTGCCTACTTCCACAGGTTTCACCTTCCGAACCAGTTGAGAGATTCATGTTGCCATTTGAAGCAACAGGACCCCTACAAGGCACTGTACAATTGAAGGAAGTGGATATGCGTTTCTTTGATGATGCAGTTGTTCCAGTAGTAGATGATTGGGGCAGCTGTATAGGATTGGTGCACCGTGAAGACTGTGTGCAGTTGGACTTGAATGCTTCGCTTTCAACAATGATGAGAAGCCCGCCTCCCACTGTTACAACTACAACATCAGTTGGTCATGTTGTTGATTTGATTCTGGAGAAGGGCTACCCAATGGTTATCGTTGTAAAGTACACCGGCTCATATGGTACTGCATACAGCTCAAGGGCAGTTGGAGTTTTTACACTACAGCAGTTGTATAGGTTTATCACACCTGCATTTGAATCACTAGGGCCAAAACTTTCAGTGTTTAGTAGATAA 1938 0.4401 MLETHILSHFNLLQSNSKPISSFLITSSSSSSFSPIRRRLKSAANPLTRNLKCLTSRIVQLTRRRQLHQVLFSHLIFFYVATSCCSLLRLRFLGLVWGMLALTFDGFLPQILEEIEIAKKRYGRLNTIVMNAVVEACVHCGDIDSALRIFNEMTKPGSCGVDTVTYSTLLKGLGELRKVDEAFQLLESVEKGTAPGNPKLSASLIFGLLNAIIEAGESEGDLRRANGLLARYGHVLREGGKFSVSVYNVLIKGYITAGFPRDAVNLHNEMLRHGMKPDRLTYNTLILACVKSQNVDTAVQFYENMKDEAQKSTHNDVLPDIVTYTTLLKGLGHAKDLSSVLKIVLEMKSCQELYIDRTAYTAIVDALLNCGSIKGAQCIFGEILKLAGWNPELRPKPHLYLSMMRAFASRGDYNVVKKLHRRLLPDSAGTILPVAQEEADHLLMEAALNSGQVDVAVETLINIASKWKGIPWTSRGGMVTLRIEATLGFSKSIFSPCLLPQVSPSEPVERFMLPFEATGPLQGTVQLKEVDMRFFDDAVVPVVDDWGSCIGLVHREDCVQLDLNASLSTMMRSPPPTVTTTTSVGHVVDLILEKGYPMVIVVKYTGSYGTAYSSRAVGVFTLQQLYRFITPAFESLGPKLSVFSR 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2042 645 Pfam Pentatricopeptide repeat domain 313 348 IPR002885 -
Mibi08g2042 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Mibi08g2042 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 192 IPR002885 -
Mibi08g2042 645 PANTHER OS09G0431600 PROTEIN 108 635 IPR044781 -
Mibi08g2042 645 Gene3D Tetratricopeptide repeat domain 312 486 IPR011990 GO:0005515
Mibi08g2042 645 Gene3D - 527 630 IPR046342 -
Mibi08g2042 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 126 160 IPR002885 -
Mibi08g2042 645 Pfam CBS domain 570 629 IPR000644 -
Mibi08g2042 645 Pfam PPR repeat family 244 291 IPR002885 -
Mibi08g2042 645 Pfam PPR repeat family 126 173 IPR002885 -
Mibi08g2042 645 Gene3D Tetratricopeptide repeat domain 204 311 IPR011990 GO:0005515
Mibi08g2042 645 Gene3D Tetratricopeptide repeat domain 97 192 IPR011990 GO:0005515
Mibi08g2042 645 ProSiteProfiles CBS domain profile. 570 635 IPR000644 -
Mibi08g2042 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Mibi08g2042 645 TIGRFAM PPR: pentatricopeptide repeat domain 322 350 IPR002885 -
Mibi08g2042 645 TIGRFAM PPR: pentatricopeptide repeat domain 130 154 IPR002885 -
Mibi08g2042 645 TIGRFAM PPR: pentatricopeptide repeat domain 164 188 IPR002885 -
Mibi08g2042 645 TIGRFAM PPR: pentatricopeptide repeat domain 281 307 IPR002885 -
Mibi08g2042 645 TIGRFAM PPR: pentatricopeptide repeat domain 246 278 IPR002885 -
Mibi08g2042 645 SUPERFAMILY CBS-domain pair 535 630 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2042 Mibi-ChrMibi08 37681563 37686094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2042 126 424 Glycosyltransferase AT1G05670 25.532 3.91e-16 80.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g2042 08 37681563 37686094 Mibi08g2042 08 37681563 37686094 ECH