Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1160 ATGGCGACTGAACCTCCTCCTTCACTCCCTCCATACCCAGAGATGATAATGAAGGCTCTGGAGGCTCTGAACGAACCGGCCGGTTCGAGCAAATCGGCGATTGCGAAGCACATAGAGGCTACCTACGGCGAGATGCCAGCGAGTCACATGGCGGTGCTTTCTAACCATCTGATTAGGATGAAGGAGACTGGTGAGCTCGAGTTTGTGAAGAACAATTACAGGAAGCCCGACCCGAATGCACCGCCCAAGAGGGGTCGGGGCAGGCCACCCAAGCCCAAGACTCCTCTGCCTCCGGGCACAGTTCTGTCTCCGCCTAGGCCCAGAGGCCGTCCGCCCAAGGATCCTGATGCTCCGCCCAAGCCCAAGGCCCAAACTGGGAGTGGTAGGCCCAGAGGAAGGCCCAAGAAGGCGGCCCGTACTTCGCCCGAGAGTGGGCCCGTTGTGAGTAGAGGCCGAGGTAGGCCTCCCAAGGAGAAGCCAGCACAGTTGACTGAAGTGAGCGTGGAACAATGA 513 0.5945 MATEPPPSLPPYPEMIMKALEALNEPAGSSKSAIAKHIEATYGEMPASHMAVLSNHLIRMKETGELEFVKNNYRKPDPNAPPKRGRGRPPKPKTPLPPGTVLSPPRPRGRPPKDPDAPPKPKAQTGSGRPRGRPKKAARTSPESGPVVSRGRGRPPKEKPAQLTEVSVEQ 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1160 170 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Mibi08g1160 170 SMART AT_hook_2 128 140 IPR017956 GO:0003677
Mibi08g1160 170 SMART AT_hook_2 105 117 IPR017956 GO:0003677
Mibi08g1160 170 SMART AT_hook_2 149 161 IPR017956 GO:0003677
Mibi08g1160 170 SMART h15plus2 6 72 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi08g1160 170 MobiDBLite consensus disorder prediction 68 170 - -
Mibi08g1160 170 FunFam HMG-Y-related protein A 4 86 - -
Mibi08g1160 170 MobiDBLite consensus disorder prediction 68 84 - -
Mibi08g1160 170 Pfam linker histone H1 and H5 family 10 71 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi08g1160 170 PRINTS High mobility group protein (HMGY) signature 81 93 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Mibi08g1160 170 PRINTS High mobility group protein (HMGY) signature 117 136 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Mibi08g1160 170 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677
Mibi08g1160 170 PRINTS AT-hook-like domain signature 126 136 IPR017956 GO:0003677
Mibi08g1160 170 PRINTS AT-hook-like domain signature 103 114 IPR017956 GO:0003677
Mibi08g1160 170 MobiDBLite consensus disorder prediction 91 108 - -
Mibi08g1160 170 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 8 77 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi08g1160 170 SUPERFAMILY "Winged helix" DNA-binding domain 5 83 IPR036390 -
Mibi08g1160 170 Gene3D - 5 86 IPR036388 -
Mibi08g1160 170 PANTHER HISTONE H1 8 161 - -
Mibi08g1160 170 Pfam AT hook motif 128 138 IPR017956 GO:0003677
Mibi08g1160 170 Pfam AT hook motif 105 116 IPR017956 GO:0003677
Mibi08g1160 170 Pfam AT hook motif 150 160 IPR017956 GO:0003677
Mibi08g1160 170 Pfam AT hook motif 83 92 IPR017956 GO:0003677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1160 08 26756362 26757021 Mibi08g1160 08 26756362 26757021 CCT
Mibi08g1160 08 26756362 26757021 Mibi08g1160 08 26756362 26757021 ECH