Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0572 ATGGATCCAATCGAAGCATGGCAAGACCTTGCTTTTCGGGTCGGTTTCACCGGTCACAGTGGACACCTCCGTGTAGAGCCTTTGTCGACTGTGGAGCGTTCCAACCCATTGAATTCCCTTCCTGATTTCATCCTGCCACCTGCATTTCCGAAGGAGACACCTGAGTCTGTAAGGAAGTATATTGAAGAGACATATCTTAGCCCAAGATTGGATGCTGATGAATTTTCACCTGAGAAAGTTGGGAGGCAGTGGGAGTTTGACTGGTTTGACAGGGCTGAAGTGCCTCTGGAGCCATCTTTGCCTCGTACTGCTGTGGTTCCTGTTTGGGAACCACCGTTTCGACGACAAAATAATGTTTCAGAGCAAGGAAAATGGGAGCCAAAGTCTGAGGAGGTGGATGTGTCAGAATTGATGCAAGGAGATGAAGATTATGGGCCATTACCACGTGCTTCTGGATCTGCTAAGGACTTAGTAAGGGGAAGCATCAATAATCGCCCCTTCCGTCCTGGAGGTTTGGATAACTCCCAAACTTTAAACAGAATAATTCCAGAAGGTGCTTCTAATGGTGAATGGGTGCGTGAAATTTTGAATGGTGGCCCTCCTCAGACAATTCCTCCTGGCTTTAAACAAGGGTTGGACCTTGGAGCATTTAAGGAGATTGGTATTAGTGGGTTGTCTCTACAGTTTGATGACTTATTTAAGAAGGCTTGGGAAGATGGTGTTTCTCATGAGCAAGAGGATGATGGTGTTTCTCATGACCAAGAGGAAGATGAAGTGGAGTCTGTTGTGCTGGAAGTTGAAGTTGATAAGGCTGAGACATCTAGCAGTACGCATGAGGACGAATTTTCATTAGATGAGGTCTTGTCAACTAAATCAAATGGGTCAAAACCACTTTTAAATGCACCTAGTGATGGTGGATGGCAGCAAAAGGAGTTCATCTCTTGGCAGGCTTGGGCACGCCGTGGAGGTAGCAAAGAAATCATAGACCACTTCCATGAACTTGTTCCTGATATGGCACTTCATTTTCCCTTTGAATTGGATGCATTTCAGAAGGAGGTACTGATTATGGATAATTCTCTTTTTGCTATATATTACCTTGAGAAAGGGGAATCTGTTTTTGTTGCTGCTCACACATCAGCTGGCAAGACTGTAGTGGCAGAATATGCATTTGCTTTAGCATCAAAGCATTGCACTAGGGCTGTGTATACTGCTCCAATAAAAACCATCAGCAATCAGAAATATAGGGATTTCTGTGGGAAGTTTGATGTTGGGCTGCTAACTGGTGATGTAACCTTGAGGCCAGAGGCTGCTTGTCTCATCATGACCACAGAAATATTAAGATCTATGCTCTATCGAGGTGCAGATATTATTCGGGATATTGAATGGGTAAGGAACTTTTTTGTAGTATCACGCCCGAGGACCACAAAAAGACCTGTCCCATTGGAGCACTGCCTGTTTTATTCTGGAGAACTTTACAAAATTTGTGAAAATGAAGAATTTCTGCCTCAGGGACTGAAAGATGCTAAGGATGTGTTTAAGAAGAAACATTCAACTGCTGTTGGTGGTGGTTCAGGACGATATTCGGGTACTTCAGCAGGCCGTGATGGTAGTCAAGCTCAAAAACGTGAAAATTCTGCACGACTTAAACATGGAAGTAATTTCTCCAAAACTTCTAGAGGCTGTCAGAATAATGGAAATGGCCAGAACAACTGGGAACTCAGGAGGGCAGAAGCTTCTATGTGGTTGATGCTTATTAACAAGCTCTCCAAAAAATCGCTGTTGCCTGTGGTCATATTCTGTTTTTCTAAGAATCGCTGTGATAAATCAGCAGATAACATTACTTCAACTGACTTAACTAGTAGCTCAGAGAAAAGTGAAATCCGTGTTTTCTGTGATAAAGCATTTTCAAGGTTGAAAGGATCTGACAGGAATTTACCACAGATTGTTCGAGTCCAGAATCTTCTTCGTAGAGGGATTGGTGTGCATCATGCTGGCCTTCTTCCAATTGTAAAGGAAGTAGTTGAAATGCTATTCTGCCGTGGTGTAATCAAGGTTTTGTTTTCAACGGAGACATTTGCAATGGGTGTCAATGCTCCTGCTAGAACAGTAGTCTTTGATACTTTGAGGAAGTTTGATGGCAAGGAATTCAGGCAGTTACTACCGGGAGAATATACTCAAATGGCTGGTCGTGCTGGAAGAAGAGGTCTTGATAAGATTGGTACTGTTGTTCTAATGTGCCGTGATGAAATCCCTGAAGATAGGGATTTAAAGCATGTTATTGTTGGAAATGCAACTCACCTTGCATCTCAATTTCGGCTTACCTATATTATGATCCTCCATCTCCTTCGAGTTGAAGAATTGAAGGTAGAAGATATGCTCAAAAGAAGTTTTGCTGAATTCCATGCTCAGAAAAAACTACCTGAAATGCAAGAACTTTTGAAGCGAAAGCTTGATCAGCCTACAAAAGCTATTGAATGCATAAAGGGTGAGCCAACCATCGAGGAATACTACCAGACATACTCTGAAGCTGAGAAGTACAGTAGCAAAATATCAGATGCAATTTTGCAGTCCTCTAATGCCCAACCATTTCTTGCTCCTGGAAGAGTAATAGTAGTAAAATCAGAATCAGCCAAGGATCACCTTCTTGGTGTGATTGTGAAAGCAGCTTCTGCGAATTATAAGCAATATATTGTTTTAGTGCTCAGGCCTGATTTGCCATCCCCAATAGAAAATGCCCCAAGTAGGGGTAATGTGCAAGACAAACCCAGTGGCTTCGACCAGGGTTATTTTGTGCTGCCTAAAACCAAACGTGGTTTCGGAGATGATTATCATACCTCTGCCTCAGCTCGCAAAGGAACAGGTGTTATCAACTTCGCACTGCCCCATCATGGTTATGTTAGTGGAATGAGTTATGAGGTTAGGGGAGTTGATAGTAAAGAATTTCAGTGGATTTGCAATAAAAAAATGAAAATTGATCAAGCTGGACTTCTTGAAGATGATAGCAATGTTGTTTACTCCAAGACAGTTCAGATGCTCCTGGATTTAAAATCAGATGGAAACAAGTATCCTCCACCCCTGGATCCTGTTAAAGATCTAAAGTTGAAGGATGTAGAACTTGTGGACACATACCGTAAATGGACTAAATTAATGGATAAAATGACCCGGAATCCATGTCATGGGTGTATAAAATTGGAAGAGCACATTAAGCTAGCGAAAGACATACAAAAGCACAAGGAAGAAGTCAATGATCTCCAATATCAAATTTCAGACGAAGCACTTCAACAAATGCCAGACTTTCAGGGCCGGATTGATGTTCTTAAGGAAATTGGTTGCATAGATGACGATTTAGTTGTACAAATGAAAGGCCGTGTTGCCTGTGAGATGAACTCTGGCGAGGAATTGATTTGCACTGAATGCTTGTTTGAGAATCAGCTGGATGAACTGGAACCGGAAGAAGCTGTGGCATTAATGTCTACTTTTGTGTTTCAGCAGAGGAACACTTCTGAGCCTTCACTCACAACCAAACTGTCTGAGGCAAAACATAAATTGTACAATACGGCTATAAAACTTGGACAACTTCAAGTGGAGAAAGGACTACAAATAATTCCTGAAGAATACGCCGAAGAAAATCTCACGTTTGGTCTAGTTGAAGTGGTTTATGAATGGGCAAAGGGTACTCCATTTGCAGACATCTGTGAGCTCACAGATGTTCCTGAAGGCATGATAGTGAGGACCATTGTGAGATTGGATGAGACATGTCGAGAGTTTAAGAATGCTGCAGCAATTATGGGTAATTCTGCTCTCTGCAAGAAAATGGAAGTTGCTTCTAATGCAATTAAGCGTGACATTGTTTTTGCAGCTAGCTTGTACATTACTGGTGTATGA 3885 0.4214 MDPIEAWQDLAFRVGFTGHSGHLRVEPLSTVERSNPLNSLPDFILPPAFPKETPESVRKYIEETYLSPRLDADEFSPEKVGRQWEFDWFDRAEVPLEPSLPRTAVVPVWEPPFRRQNNVSEQGKWEPKSEEVDVSELMQGDEDYGPLPRASGSAKDLVRGSINNRPFRPGGLDNSQTLNRIIPEGASNGEWVREILNGGPPQTIPPGFKQGLDLGAFKEIGISGLSLQFDDLFKKAWEDGVSHEQEDDGVSHDQEEDEVESVVLEVEVDKAETSSSTHEDEFSLDEVLSTKSNGSKPLLNAPSDGGWQQKEFISWQAWARRGGSKEIIDHFHELVPDMALHFPFELDAFQKEVLIMDNSLFAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVTLRPEAACLIMTTEILRSMLYRGADIIRDIEWVRNFFVVSRPRTTKRPVPLEHCLFYSGELYKICENEEFLPQGLKDAKDVFKKKHSTAVGGGSGRYSGTSAGRDGSQAQKRENSARLKHGSNFSKTSRGCQNNGNGQNNWELRRAEASMWLMLINKLSKKSLLPVVIFCFSKNRCDKSADNITSTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKIGTVVLMCRDEIPEDRDLKHVIVGNATHLASQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEMQELLKRKLDQPTKAIECIKGEPTIEEYYQTYSEAEKYSSKISDAILQSSNAQPFLAPGRVIVVKSESAKDHLLGVIVKAASANYKQYIVLVLRPDLPSPIENAPSRGNVQDKPSGFDQGYFVLPKTKRGFGDDYHTSASARKGTGVINFALPHHGYVSGMSYEVRGVDSKEFQWICNKKMKIDQAGLLEDDSNVVYSKTVQMLLDLKSDGNKYPPPLDPVKDLKLKDVELVDTYRKWTKLMDKMTRNPCHGCIKLEEHIKLAKDIQKHKEEVNDLQYQISDEALQQMPDFQGRIDVLKEIGCIDDDLVVQMKGRVACEMNSGEELICTECLFENQLDELEPEEAVALMSTFVFQQRNTSEPSLTTKLSEAKHKLYNTAIKLGQLQVEKGLQIIPEEYAEENLTFGLVEVVYEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGNSALCKKMEVASNAIKRDIVFAASLYITGV 1294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0572 1294 Coils Coil 1067 1094 - -
Mibi08g0572 1294 Gene3D - 1072 1291 - -
Mibi08g0572 1294 Gene3D - 769 834 - -
Mibi08g0572 1294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 459 IPR027417 -
Mibi08g0572 1294 MobiDBLite consensus disorder prediction 550 568 - -
Mibi08g0572 1294 SMART helicmild6 649 735 IPR001650 -
Mibi08g0572 1294 Pfam Ski2 N-terminal region 79 216 IPR040801 -
Mibi08g0572 1294 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 584 782 IPR001650 -
Mibi08g0572 1294 Gene3D - 310 464 IPR027417 -
Mibi08g0572 1294 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 363 463 IPR014001 -
Mibi08g0572 1294 CDD SF2_C_Ski2 584 747 - -
Mibi08g0572 1294 SMART DSHCT_2 1113 1291 IPR012961 -
Mibi08g0572 1294 FunFam Ski2 ATP-dependent RNA helicase 1066 1291 - -
Mibi08g0572 1294 Gene3D - 478 768 IPR027417 -
Mibi08g0572 1294 FunFam DExH-box ATP-dependent RNA helicase DExH11 478 768 - -
Mibi08g0572 1294 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 473 1275 - -
Mibi08g0572 1294 MobiDBLite consensus disorder prediction 517 568 - -
Mibi08g0572 1294 FunFam DExH-box ATP-dependent RNA helicase DExH11 769 836 - -
Mibi08g0572 1294 Pfam rRNA-processing arch domain 790 1090 IPR025696 -
Mibi08g0572 1294 PIRSF SKI2 48 469 IPR016438 GO:0003723|GO:0003724|GO:0006401
Mibi08g0572 1294 PIRSF SKI2 464 1291 IPR016438 GO:0003723|GO:0003724|GO:0006401
Mibi08g0572 1294 Pfam DSHCT (NUC185) domain 1117 1286 IPR012961 -
Mibi08g0572 1294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 749 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0572 Mibi-ChrMibi08 10094616 10114831 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g0572 08 10094616 10114831 Mibi08g0572 08 10094616 10114831 ECH