Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0043 ATGGACCCTCATCGCCGCCGCCAAACCCACGAAGGCTCAGCCGCCGTCGCCGTCGACTCCTCCTCCTCTCCGAATCTCATGAAGAAGAACCATCGAACATCGTCTCCTACCCCTAAAGCTTCCGACGCCCTACCCCTTCCTCTTTACCTCACCAATGCTGTCTTCTTCACCCTCTTCTTCTCCGTCGCATACTACCTCCTCCACCGCTGGCGCGACAAGATCCGCAATTCCACGCCTCTCCACGTCGTCACCTTGTCGGAGATCGCCGCCATTGTTTCCTTAATCGCGTCCTTCATTTACCTCCTCGGCTTCTTCGGCATTGACTTCGTTCAATCCTTCATCGCACGTGCTTCTCACGATGTTTGGGACCTCGAGGACGAGGCCGATCGTGATTCTCACGAGCACCATCAGCGGCCTGATTTTGTTATCGAGAAGCCGGTGCCTAAATTGATGGTGGAGCCTGATCCATTGGTTTCGTCTCTTTCGTGTGAGGAGGATGAGAAGGTTGTGGAGTCTGTGTTGGATGGTACGGTTCCCTCGTATTCGCTGGAGTCTAAGCTTGGGGATTGCAAGCGTGCGGCGGCCATAAGGCGTGATGCGTTGCAGAGGATGACTGGGAGATCTCTTCAGGGATTACCGTTGGATGGGTTTGATTATGATTCGATTTTGGGGCAGTGTTGTGAAATGCCGGTGGGTTATGTGCAGATTCCTGTGGGGGTGGCTGGGCCGTTGTTGCTTGATGGGTTTGAGTATACGGTACCGATGGCGACGACTGAGGGGTGCTTGGTGGCGAGTACGAACAGAGGGTGTAAAGCTATTTATGCTTCTGGGGGAGCTACTAGTGTTGTGTTGAGGGATGGGATGACTAGAGCGCCTGTTGTGAGGTTTGGTTCAGCCAAAAGGGCTGCCGACTTGAAGTTCTATCTGGAGGATCCTCTCAATTTCGATACCTTGTCCGTCGTTTTCAATAGGTCAAGTAGATTTGCTAGGCTTCAAAGTATTCATTGTGCTATCGCCGGAAAGAACCTTTTCATGAGATTCAGCTGTAGCACAGGTGATGCCATGGGGATGAACATGGTTTCCAAAGGCGTGCAGAATGTCCTTGATTTCCTTCAAAATGATTTCCCTGACATGGATGTTATTGGCATCTCTGGGAATTATTGTTCCGATAAGAAACCTGCTGCTGTAAATTGGATTGAGGGGCGTGGAAAGTCAGTTGTTTGCGAAGCAATTATTAAAGAAGAGGTGGTGAAGAAGGTATTGAAGACCAACGTGGCTGCCTTAGTGGAACTTAACATGCTTAAAAACCTTACTGGTTCTGCTGTCGCGGGCGCTCTAGGTGGATTCAATGCCCATGCCAGCAATATCGTTTCTGCCATTTTTATAGCCACCGGTCAAGATCCGGCACAGAATGTTGAGAGCTCCCATTGCATAACCATGATGGAAGCCATCAATGATGGAAGAGACCTTCATATCTCAGTGTCTATGCCTTCCATTGAGGTGGGTACAGTTGGAGGTGGTACTCAGCTAGCATCTCAGTCTGCTTGCTTGAATTTACTGGGTGTGAAGGGCGCGAGCAAGGATTCGCCAGGATCAAACTCAAGACTCTTGGCCACTGTTGTTGCCGGTTCAGTCTTGGCAGGAGAGCTATCTCTGATGTCTGCCATTTCTGCAGGTCAGCTTGTAAGGAGTCACATGAAATACAATAGATCAAGCAAGAATGTCTGTAACATGGCAAGTTGA 1743 0.5009 MDPHRRRQTHEGSAAVAVDSSSSPNLMKKNHRTSSPTPKASDALPLPLYLTNAVFFTLFFSVAYYLLHRWRDKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFIARASHDVWDLEDEADRDSHEHHQRPDFVIEKPVPKLMVEPDPLVSSLSCEEDEKVVESVLDGTVPSYSLESKLGDCKRAAAIRRDALQRMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGVAGPLLLDGFEYTVPMATTEGCLVASTNRGCKAIYASGGATSVVLRDGMTRAPVVRFGSAKRAADLKFYLEDPLNFDTLSVVFNRSSRFARLQSIHCAIAGKNLFMRFSCSTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVAALVELNMLKNLTGSAVAGALGGFNAHASNIVSAIFIATGQDPAQNVESSHCITMMEAINDGRDLHISVSMPSIEVGTVGGGTQLASQSACLNLLGVKGASKDSPGSNSRLLATVVAGSVLAGELSLMSAISAGQLVRSHMKYNRSSKNVCNMAS 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0043 580 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 555 568 IPR023076 GO:0004420
Mibi08g0043 580 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 29 573 IPR002202 GO:0004420|GO:0015936
Mibi08g0043 580 MobiDBLite consensus disorder prediction 1 40 - -
Mibi08g0043 580 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 162 236 - -
Mibi08g0043 580 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 226 247 IPR002202 GO:0004420|GO:0015936
Mibi08g0043 580 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 489 510 IPR002202 GO:0004420|GO:0015936
Mibi08g0043 580 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 435 461 IPR002202 GO:0004420|GO:0015936
Mibi08g0043 580 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 253 273 IPR002202 GO:0004420|GO:0015936
Mibi08g0043 580 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 344 362 IPR002202 GO:0004420|GO:0015936
Mibi08g0043 580 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 384 409 IPR002202 GO:0004420|GO:0015936
Mibi08g0043 580 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 346 360 IPR023076 GO:0004420
Mibi08g0043 580 Gene3D - 157 236 IPR023282 GO:0004420
Mibi08g0043 580 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 166 570 IPR002202 GO:0004420|GO:0015936
Mibi08g0043 580 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 287 403 IPR009023 -
Mibi08g0043 580 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 501 508 IPR023076 GO:0004420
Mibi08g0043 580 MobiDBLite consensus disorder prediction 14 40 - -
Mibi08g0043 580 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 392 565 - -
Mibi08g0043 580 Pfam Hydroxymethylglutaryl-coenzyme A reductase 194 570 IPR002202 GO:0004420|GO:0015936
Mibi08g0043 580 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 163 559 IPR009029 GO:0015936|GO:0016616
Mibi08g0043 580 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 166 570 IPR004554 GO:0004420|GO:0005515|GO:0008299
Mibi08g0043 580 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 287 403 - -
Mibi08g0043 580 Gene3D - 237 565 IPR023074 GO:0004420
Mibi08g0043 580 CDD HMG-CoA_reductase_classI 167 570 IPR004554 GO:0004420|GO:0005515|GO:0008299
Mibi08g0043 580 Gene3D - 287 403 IPR009023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0043 Mibi-ChrMibi08 653256 656313 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0043 21 575 Lipid Metabolism Gene Families AT1G76490 77.798 0.0 905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g0043 08 653256 656313 Mibi08g0043 08 653256 656313 ECH