Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1844 ATGGATGGGTATGAAGCTACAAGAATTGTTTTCTCACGGATCCAAAGCTTGGACCCTGAGAATGCTTCCAAAATCATGGGTCTGCTTCTGATTCAAGACCATGGTGAGAAAGAAATGATTAGATTAGCATTTGGTCCTGAAGCTCTTGTTCATTCTGTGATTGTCAAAGCTCGAAAAGACTTGGGATTATCCTCTTACTCACCATCTTCACCTTCATCTCCTCTTCCTCCTCCCCCTCCTCTTCCATCTTCTTCTTCTTCATCACCATCATCTTTCCTTGCAAGGCAAAATTCCACTCCTTCAAGGCTAAGCAACACAGGAGTCAACAACTTTCCTCCTCCTGCTCTTTCAATCCCAAACCCCCCTTGTTCAGCCTCTTGGGCTGATAATAATCTGATGAGCCCAAACAACAATTTGCTTGTTGCCTCTAATTCCCCTCACATCAACCTTCCTTCACCATCTTCTACCTTACCCTTTTATGGGTCATCTGATCCAATTGATGATTTTCAACTTCAAGACCAGCTTTCTTTCCTCAATGATGGGTCCCCCACCATCAGTAGGAAAAACCCAGATTTGTTCTATCCTCAGTCAGACTTAACTTCAAGTCCAACTGGTGGGGAAGCCACTGTTTTCCCCTCTTATGGTTGGGGCGGCCCTGTCCATCATCGCAGGAGTTGCTCAGTTAATGAAGCTTGTCTGGGGTCTGAGGATCCAAACTCTGGGTTTGGTTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTATTGCAAGAATGGTACAAGCTGTAGGTTCCTTCATGGAGGAGGAGGAGGGATTGGAGATTCTGATGGCGTTTCAATGGTGGGGTCCCCTAATAAGATTGAGATGTTGGACCAGAGTAACCATGAGCTTCTCAGATCTAAAACTGCTCAGCAGCAAAGGTTGCTCATGGCTTCTTCTTTGCCTTACTCTCCTAAAGGCATGAATTTTATGCTGCAACAGCAGCAAAATGATACCCAGAGAGCTGCAGCTGCGCTTATGATGAATGAGGATATGCATAAGTTTGGGCGATCCAGGCTTGAAAGAAACGATTTTTCTTTCAATGGAGGTTCTGGAATAGGAAACCCAGCTTCTAGGCAGATCTACTTGACCTTTCCAGCTGATAGTACTTTTAGAGAGGAAGATGTTTCGAATTACTTCAGCATTTATGGTCCTGTTCAAGATGTGAGGATCCCTTATCAGCAGAAGCGTATGTTTGGATTTGTGACCTTTGTTTATCCAGAGACTGTAAAGCTCATTCTGTCAAAGGGTAACCCCCATTTCGTTTGTGATGCTCGCGTGCTAGTTAAACCTTACAAGGAAAAAGGCAAAGTCCCAGACAAGTACAGGAAACAAGTCGAAAGGGGTGATTTCTCACCATGTGGTACTCCTACTGGACTTGATGCTAGAGATCCATTTGATCTTCAACTTGGAGGGAGAATGTACTATAATACTCAAGATATGCTGTGGAGGAGGAAGTTGGAGGAGCAAACTGATTTTCAGCAAGCTCTTGAGCTGCAAAGTAGGAGACTCATGGGTCTGCAACTTCTTGACATCAAGAAGCAGCACCAGAGGGCATTCTCAACAGGAAGCCCAATTCCATCCCCTACTCATTCTCCCAACATGTTCAATCAGAATCTTGTTCTTCCTTCGTTCCGCGGTGGCAGCCCTGAGGCTTCTCTAGAGGAGAGTGTTTTGAGCTCTGTTCATCCTAGCACGGCACCGATTTCTGTTGCTCAGCAGCCAAAGGTCAATATTTCTGTTGGCAAAGTGTCTGCCAATGGGCTCTAG 1806 0.4524 MDGYEATRIVFSRIQSLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVIVKARKDLGLSSYSPSSPSSPLPPPPPLPSSSSSSPSSFLARQNSTPSRLSNTGVNNFPPPALSIPNPPCSASWADNNLMSPNNNLLVASNSPHINLPSPSSTLPFYGSSDPIDDFQLQDQLSFLNDGSPTISRKNPDLFYPQSDLTSSPTGGEATVFPSYGWGGPVHHRRSCSVNEACLGSEDPNSGFGWKPCLYFARGYCKNGTSCRFLHGGGGGIGDSDGVSMVGSPNKIEMLDQSNHELLRSKTAQQQRLLMASSLPYSPKGMNFMLQQQQNDTQRAAAALMMNEDMHKFGRSRLERNDFSFNGGSGIGNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYRKQVERGDFSPCGTPTGLDARDPFDLQLGGRMYYNTQDMLWRRKLEEQTDFQQALELQSRRLMGLQLLDIKKQHQRAFSTGSPIPSPTHSPNMFNQNLVLPSFRGGSPEASLEESVLSSVHPSTAPISVAQQPKVNISVGKVSANGL 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1844 601 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 383 428 IPR000504 GO:0003723
Mibi07g1844 601 MobiDBLite consensus disorder prediction 70 85 - -
Mibi07g1844 601 SUPERFAMILY CCCH zinc finger 244 266 IPR036855 GO:0046872
Mibi07g1844 601 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 378 449 - -
Mibi07g1844 601 SMART c3hfinal6 243 267 IPR000571 GO:0046872
Mibi07g1844 601 MobiDBLite consensus disorder prediction 86 113 - -
Mibi07g1844 601 SUPERFAMILY RNA-binding domain, RBD 382 456 IPR035979 GO:0003676
Mibi07g1844 601 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 371 447 IPR000504 GO:0003723
Mibi07g1844 601 SMART rrm1_1 372 442 IPR000504 GO:0003723
Mibi07g1844 601 MobiDBLite consensus disorder prediction 65 113 - -
Mibi07g1844 601 Gene3D - 310 461 IPR012677 -
Mibi07g1844 601 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 565 - -
Mibi07g1844 601 Gene3D - 235 308 - -
Mibi07g1844 601 CDD RRM_AtC3H46_like 373 442 IPR034365 -
Mibi07g1844 601 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 246 266 IPR000571 GO:0046872
Mibi07g1844 601 ProSiteProfiles Zinc finger C3H1-type profile. 241 268 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1844 Mibi-ChrMibi07 38842005 38844300 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi07g1844 07 38842005 38844300 Mibi07g1844 07 38842005 38844300 ECH