Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g0373 ATGGCTCCTTCTCCGTCTGAGAACGGCGATGCAAGAGAGGAGGACGACGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGATGAGCCTAGGCTTAAGTATCAGAGAGTGGGAGGCAGCATACCTTCGCTACTAGCCAGTGATGCGGCCTCGTGTGTCTCTGTTGCCGAGCGGATGATCGCCATTGGTACTCATTGTGGCACCGTTCATATCCTTGATTTTCTTGGAAATCAGGTGAAAGAATTTGTTGCTCATGCTGCTGTTGTTAATGACCTTAGCTTTGACCTAGAGGGTGAGTATATTGGAAGCTGTTCTGATGATGGATCTGTGGTAATAAACAGCCTATTTACTGGTGAGAAAATGAAACTTGAGTATCGTCGACCAATGAAGGCTATTGCTCTGGACCCAAATTATGCGAGGAAAACATCAAGGAGATTTGTTGCAGGTGGTTTAGCTGGCCATTTATATATTAATTCAAAGACATGGTTAGGTTATCGTGATCAGGTTTTGCACTCTGGTGAGGGTCCAATACATGCTGTGAAGTGGAGAACAAATCTTGTTGCTTGGGCCAATGATGCAGGAGTGAAGGTTTATGATGTAGCCAATGATCAGCGTGTAACGTTTATTGAAAAACCACGAGGGGGCTCACACCCTGAGCTTCTGCTTCCTCACTTGGTTTGGCAGGATGATACCCTCTTGGTGATAGCTTGGGGAACATCTATCAAAATTGTATCGATAAGAACAAATCTCTACGAAGCACTCAATGGGATAGACAGGCCAGTCCCAATATCTAGTATCAACCAGGTGGATGTTGTGGCATCTTTTCAAACCACCTATTTCATATCAGGCATTGCCCCATTTGGTGATGCCTTGGTTGTTCTGGCTTATATTCCTGGAGAAGACGGAGAACAGGACATTAATGACGCTACTCTTTCTCAGCAGGGCAATGCACAAAGACCAGAAGTACATGTAGTAACATGGAACAATGATGAACTTTCAACAGATGCTCTACCATTAAATGGTTTTGAGCATTACAAGGCGAATGATTATTCCCTTGCCCATGCTCCCTTCTCAGGTAGCAGTTATGCTGGTGGTCAGTGGGCTGCAGGTGACGAACCTCTTTACTACATTATGTCCCCAAAAGATGTGGTCATTGCAAAGCCAAGGGATACTGAAGATCATATTGCATGGCTTCTTCAACATGGGTGGCATGAAAAAGCCTTGGCTGTAGTTGAATCCGGTCAAGGAAGGAGTGAACTTCTTGAGGAGGTTGGAACCAGGTACCTTGATCATTTAGTTGTGGAAAGAAAATATTCTGAAGCAGCTTCTTTGTGTCCCAAGTTGCTACAGGGATCAGCTTCAGCATGGGAAAGATGGGTTTTCCACTTTGCACACCTTCGTCAACTTCCTGTATTGGTCCCCTATATGCCTACTGAAAACCCTAGACTGCGAGATACTGCTTATGAGGTCGCTCTTGTTGCATTGGCGACAAATCCATCCTATCACAGGGATCTATTGTCCACTGTTAAATCCTGGCCATCTGTAATTTATAGTGCATTGCCCGTTATTTCAGCCATTGAACCTCAGCTCAATACTTCTTCCATGACTGATTCACTCAAGGAGGCATTGGCTGAGTTGTATGTAATCAACGGGCAATATGGGGAAGCCTTTTCATTGTATGCTGATCTTATGAAACCAGAAATATTTGACTTCATCGATAGACATAATCTACATGAAGCAGTCCAAGACAAGGTTGTCCAACTGATGATGCTAGATTGCAAGCGTGCAGTTGCTCTATTTATTCAAAACAGGGACTTTATAAGTTCACCTGAAGTGGTGAAGCAACTTCTAAATGCTGATAATAAGCGTGACTGCAGATATTTTGTGCATTTATATCTTCATTCATTGTTTGAAGTAAACCCACATGCTGGGAAGGAATTCCATGATATGCAGATCGAACTTTATGCAGATTATGACCCAAAGATGCTGCTACCATTTCTTCGCAGTAGTCAACACTATACCCTTGAGAAGGCCCATGAATTTTGCATAAAAAGAGATCTATTGAGGGAGCAAGTCTTCATCCTTGGAAGGATGGGAAACTCGAAACAAGCCCTATCTATTATTATCGAAAAATTAGGGGATATAGAGGAGGCTGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAACTGATCAAGCAATGCCTACACAAACCTGAAATGGTGGGCATCCTATTGGAACACACAGTTGGGAATCTTGATCCCCTGTACATAGTAAATAAGGTTCCTGACGGGATGGAAATACCTCGACTTAGGGATCGGCTGGTTAAAATTATCACCGATTACAGGACTGAAACATCACTCAGACATGGGTGCAATGATATCCTGAAGGCCGACTGTGTCAATCTTTTTGTTAAGTATTACAAAGAGGCAATCCATGGAGTTTATCTAAGTAATGAGGTGGAGCAACGGGCTAAGAGAAGTGAATATCATTATTCTCAGGTGGCTGAGAAATCTACAGTTTTGGGAAACGGTGAAGTGAAGTCAAAGAATAGGGGAGGTGGAAGATGTTGTATATGCTTTGACCCTTTTTCTATTCAGAATGTATCAGACTCGGTCGTTGTTTTCTTTTGCTGCCATGCGTATCACACAACTTGTCTAATGGATTCAACTGACACTAGCAGTAGCAATAAAGAGATTGAAGCCAATAATGGGAAGGCAGAACATTATGATTATAATAGTTATGTGGATGAAGAAGAGTCCGAGGTGGATGATCATCCAATGCGTTGTATATTATGTACTACTGCTTCCAGTTGA 2838 0.4292 MAPSPSENGDAREEDDEEEEEEEEEEEEEEEDEPRLKYQRVGGSIPSLLASDAASCVSVAERMIAIGTHCGTVHILDFLGNQVKEFVAHAAVVNDLSFDLEGEYIGSCSDDGSVVINSLFTGEKMKLEYRRPMKAIALDPNYARKTSRRFVAGGLAGHLYINSKTWLGYRDQVLHSGEGPIHAVKWRTNLVAWANDAGVKVYDVANDQRVTFIEKPRGGSHPELLLPHLVWQDDTLLVIAWGTSIKIVSIRTNLYEALNGIDRPVPISSINQVDVVASFQTTYFISGIAPFGDALVVLAYIPGEDGEQDINDATLSQQGNAQRPEVHVVTWNNDELSTDALPLNGFEHYKANDYSLAHAPFSGSSYAGGQWAAGDEPLYYIMSPKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLEEVGTRYLDHLVVERKYSEAASLCPKLLQGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSYHRDLLSTVKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVINGQYGEAFSLYADLMKPEIFDFIDRHNLHEAVQDKVVQLMMLDCKRAVALFIQNRDFISSPEVVKQLLNADNKRDCRYFVHLYLHSLFEVNPHAGKEFHDMQIELYADYDPKMLLPFLRSSQHYTLEKAHEFCIKRDLLREQVFILGRMGNSKQALSIIIEKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPDGMEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLFVKYYKEAIHGVYLSNEVEQRAKRSEYHYSQVAEKSTVLGNGEVKSKNRGGGRCCICFDPFSIQNVSDSVVVFFCCHAYHTTCLMDSTDTSSSNKEIEANNGKAEHYDYNSYVDEEESEVDDHPMRCILCTTASS 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g0373 945 FunFam Vacuolar protein sorting-associated protein 41 homolog 545 810 - -
Mibi07g0373 945 FunFam Vacuolar protein sorting-associated protein 41 homolog 6 277 - -
Mibi07g0373 945 PANTHER VACUOLAR PROTEIN SORTING VPS41 11 931 IPR045111 GO:0006623
Mibi07g0373 945 SUPERFAMILY WD40 repeat-like 51 253 IPR036322 GO:0005515
Mibi07g0373 945 SMART ring_2 864 940 IPR001841 -
Mibi07g0373 945 SMART CLH_2 604 751 IPR000547 GO:0006886|GO:0016192
Mibi07g0373 945 PIRSF Vps41 2 907 IPR016902 GO:0034058|GO:0046907
Mibi07g0373 945 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 604 751 IPR000547 GO:0006886|GO:0016192
Mibi07g0373 945 MobiDBLite consensus disorder prediction 10 32 - -
Mibi07g0373 945 Coils Coil 8 33 - -
Mibi07g0373 945 SUPERFAMILY RING/U-box 863 903 - -
Mibi07g0373 945 CDD RING-H2_Vps 863 900 - -
Mibi07g0373 945 SMART WD40_4 79 118 IPR001680 GO:0005515
Mibi07g0373 945 SMART WD40_4 167 203 IPR001680 GO:0005515
Mibi07g0373 945 MobiDBLite consensus disorder prediction 1 38 - -
Mibi07g0373 945 Pfam Region in Clathrin and VPS 606 747 IPR000547 GO:0006886|GO:0016192
Mibi07g0373 945 Gene3D - 3 257 IPR015943 GO:0005515
Mibi07g0373 945 Gene3D Tetratricopeptide repeat domain 539 810 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g0373 Mibi-ChrMibi07 4566705 4578664 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi07g0373 07 4566705 4578664 Mibi07g0373 07 4566705 4578664 ECH