Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g0982 ATGGAATCGAAGCTTTTTCGCAGAATGGCGATGCAAAGTTCGATTGCGAGCAGATTTTACTACACGAGTAGAACTAGGAAACCCTCTCTTTATACTAAAATCAGTCCACTTGGTAGTCCCAGTACAAGCGTGGTGCCTGAGATCGAGGATTGGGTCTATAAGGGCAACAAGGTCTGCGTCGGCGAGCTTAAGCGCATCGTTCGAGATCTTCGCAAGCGTAGGAGGTTCACCCAAGCCCTACAGGTATCTGAGTGGATGAATAAGAATGGTGTATGCATATTTTCAGCCACTGAACATGCTGTGCAATTGGATCTGATGGGCAAAGTTCATGGATATACTTCTGCTGAAGGCTACTTTAATAACTTGAAGGAAGAAGATAAAAATAATAAGACATACGGTGCTCTTTTGAATTGCTATACACGGCAGCACCAAACTGAGAAGGCCCTCTCTCATATGCAGAAAATGAAGGAGTTGGGGCTTGCTTCATCACCTCTGAGTTACAATGACATTATGTGTCTATACACCAACGTTGGTCAGGTTGAGAAGGTCCCTGATGTGCTAGTTGAGATGAAAAAGAACAATGTTTTGCCTGACAACTTCTCCTACAGAATCTGTATCAATGCGCTTGGTGCAAGGTCTGATATTGATGGAATTGAAAGAACACTAAAAGAGATGGAAAACCAAGCTCACATTGTGATGGACTGGAACACTTATGCCGTCGTGGCTGATTTCTATATAAAAGCAGGACTTACAAGTAAGGCTGTTGATGCCCTAAAGAAAGCAGAGGAGAGGTTAGATAAGAAGGATGGTCTTGGTTACAATTTTCTTATTTCTCTTTATGCTCGTCTTGGAAACAAGACTGAAGTTATCAGATTATGGGAACGGGAGAAGAGTGATTGCAAGAGGTGCATAAACAGAGATTTCACCACCATGTTAGAATCTCTGATAAGGCTTGGTGAGCTGGATGAAGCTGAGAAAGTATTGAAGGAGTGGGAGTCATCTGGCAATTGTTACGATCCTCACGTCCCGGATGTTGTCATCAATGGATACGCACGAAAAGGGTTGCACGAGAAAGCTGAAATCATGCTGAAAAGCTTACAAAAGAGGGGGAAGGCAACCATGTCAAACAGATGGACTGAAGTGGCAGGTGGATACCTTCGCAAGGGTGAAATGGAGAAAGCATTTGATTGCTTTAAAGCAGCCCTACAGGCAGAAAATAAAGAATGGAAGCCGAATCCTAGGGTGTTTTCGGGCATAGTTAGTTGGCTTGGTGATAATGGAAGTGTTGAAGAAGTAGAAGCTTTGGTGAGCTCATTGAGAAATTATGTCCCAGTAAACAAACGAATGTACCACGCCCTCATCAAGGCTTATGTAAGACATGGAAAAGAAGTAGACGGCCTTTTGGAACGTATGAAGAAAGATAACATGGATGCAGATGAAGAAACTAAAGAAATTCTTGATATGAGGAAGTCGTAG 1476 0.4289 MESKLFRRMAMQSSIASRFYYTSRTRKPSLYTKISPLGSPSTSVVPEIEDWVYKGNKVCVGELKRIVRDLRKRRRFTQALQVSEWMNKNGVCIFSATEHAVQLDLMGKVHGYTSAEGYFNNLKEEDKNNKTYGALLNCYTRQHQTEKALSHMQKMKELGLASSPLSYNDIMCLYTNVGQVEKVPDVLVEMKKNNVLPDNFSYRICINALGARSDIDGIERTLKEMENQAHIVMDWNTYAVVADFYIKAGLTSKAVDALKKAEERLDKKDGLGYNFLISLYARLGNKTEVIRLWEREKSDCKRCINRDFTTMLESLIRLGELDEAEKVLKEWESSGNCYDPHVPDVVINGYARKGLHEKAEIMLKSLQKRGKATMSNRWTEVAGGYLRKGEMEKAFDCFKAALQAENKEWKPNPRVFSGIVSWLGDNGSVEEVEALVSSLRNYVPVNKRMYHALIKAYVRHGKEVDGLLERMKKDNMDADEETKEILDMRKS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g0982 491 TIGRFAM PPR: pentatricopeptide repeat domain 308 338 IPR002885 -
Mibi06g0982 491 TIGRFAM PPR: pentatricopeptide repeat domain 166 198 IPR002885 -
Mibi06g0982 491 TIGRFAM PPR: pentatricopeptide repeat domain 131 160 IPR002885 -
Mibi06g0982 491 Gene3D Tetratricopeptide repeat domain 295 372 IPR011990 GO:0005515
Mibi06g0982 491 Pfam PPR repeat 345 370 IPR002885 -
Mibi06g0982 491 Pfam PPR repeat 273 295 IPR002885 -
Mibi06g0982 491 Pfam PPR repeat 131 160 IPR002885 -
Mibi06g0982 491 Pfam PPR repeat 382 399 IPR002885 -
Mibi06g0982 491 Pfam PPR repeat 449 474 IPR002885 -
Mibi06g0982 491 Pfam PPR repeat 308 335 IPR002885 -
Mibi06g0982 491 Gene3D Tetratricopeptide repeat domain 373 488 IPR011990 GO:0005515
Mibi06g0982 491 Gene3D Tetratricopeptide repeat domain 61 270 IPR011990 GO:0005515
Mibi06g0982 491 SUPERFAMILY TPR-like 212 445 IPR011990 GO:0005515
Mibi06g0982 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Mibi06g0982 491 Pfam PPR repeat family 166 209 IPR002885 -
Mibi06g0982 491 FunFam Pentatricopeptide repeat-containing protein mitochondrial 61 271 - -
Mibi06g0982 491 ProSiteProfiles TPR repeat profile. 375 408 IPR019734 GO:0005515
Mibi06g0982 491 PANTHER OS12G0527900 PROTEIN 26 478 - -
Mibi06g0982 491 SUPERFAMILY TPR-like 131 411 IPR011990 GO:0005515
Mibi06g0982 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Mibi06g0982 491 Coils Coil 208 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g0982 Mibi-ChrMibi06 29473397 29475475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g0982 29 474 EF-hand Containing Proteins AT1G02150 33.772 2.62e-87 276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g0982 06 29473397 29475475 Mibi06g0982 06 29473397 29475475 ECH