Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1528 ATGGATGATGGAGATGGGGCCAAAGAGTTGACGAAGAGGAAGGGACTAGTATTCGTTGGTTCGGCCATGGAAGAAAAGCTCCCATTTAAGAATCTCCATAGCAGAGAGTACTCTGGCCACAAGAAGAAGGTTCACTCAGTGGCCTGGAATTGCATTGGCACAAAACTTGCTTCTGGTTCTGTGGACCAAACTGCTCGAATATGGTATATTGAGCCACACGGACATGGTAAGGTCAAAGATATTGAATTGAAGGGCCACACTGATAGTGTGGATCAGCTATGTTGGGATCCCAAACATGCTGATCTGATTGCAACTGCATCAGGAGACAAGACAGTTCGTTTGTGGGATGCTCGTAGTGGAAAGTGCTCACAACAGGCAGAACTTAGTGGGGAGAATATTAACATCACATACAAACCTGATGGGACACATGTAGCAGTAGGTAATAGGGATGACGAGTTGACAATACTGGATGTACGGAAGTTTAAACCAATTCATAGGCGCAAGTTCAGTTATGAGGTGAATGAGATTGCCTGGAACATGACAGGAGAGATGTTCTTCCTAACAACAGGAAATGGGACTGTTGAAGTACTAGCTTACCCATCACTGCAGCCTCTGGACACTCTCATGGCCCATACTGCTGGTTGTTATTGCATTGCTATTGATCCAAGTGGAAGGTATTTTGCTGTTGGAAGTGCTGATTCTCTAGTTAGCCTGTGGGATATCTCTGAGATGCTCTGTGTGCGTACCTTCACAAAGCTTGAATGGCCTGTGAGGACAATTAGTTTCAATCATACCGGTGATTATATTGCTTCAGCCAGTGAAGACTTGTTCATTGATATATCGAATTTGCAAACGGGACGGACGGTGCATCAGATTCCATGTAGGGCTGCCATGAACAGCGTGGAATGGAATCCGAAATACAATTTACTTGCATATGCTGGTGATGACAAAAACAAGTATCAGGCTGATGAAGGTGTTTTTCGAATTTTTGGCTTTGAAAGTGCCTAA 1008 0.4435 MDDGDGAKELTKRKGLVFVGSAMEEKLPFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWYIEPHGHGKVKDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHRRKFSYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLQPLDTLMAHTAGCYCIAIDPSGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFNHTGDYIASASEDLFIDISNLQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIFGFESA 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1528 335 Gene3D - 189 321 IPR015943 GO:0005515
Mibi05g1528 335 SUPERFAMILY WD40 repeat-like 31 317 IPR036322 GO:0005515
Mibi05g1528 335 ProSiteProfiles Trp-Asp (WD) repeats profile. 83 125 IPR001680 GO:0005515
Mibi05g1528 335 Gene3D - 26 188 IPR015943 GO:0005515
Mibi05g1528 335 SMART WD40_4 243 282 IPR001680 GO:0005515
Mibi05g1528 335 SMART WD40_4 76 116 IPR001680 GO:0005515
Mibi05g1528 335 SMART WD40_4 30 69 IPR001680 GO:0005515
Mibi05g1528 335 SMART WD40_4 160 198 IPR001680 GO:0005515
Mibi05g1528 335 SMART WD40_4 201 240 IPR001680 GO:0005515
Mibi05g1528 335 SMART WD40_4 285 323 IPR001680 GO:0005515
Mibi05g1528 335 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 249 IPR001680 GO:0005515
Mibi05g1528 335 PRINTS G protein beta WD-40 repeat signature 227 241 IPR020472 -
Mibi05g1528 335 PRINTS G protein beta WD-40 repeat signature 56 70 IPR020472 -
Mibi05g1528 335 PRINTS G protein beta WD-40 repeat signature 103 117 IPR020472 -
Mibi05g1528 335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 83 121 - -
Mibi05g1528 335 PANTHER THO COMPLEX SUBUNIT 3 THO3 24 332 IPR040132 GO:0006406
Mibi05g1528 335 FunFam THO complex subunit 3 197 331 - -
Mibi05g1528 335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 208 242 - -
Mibi05g1528 335 Pfam WD domain, G-beta repeat 82 116 IPR001680 GO:0005515
Mibi05g1528 335 Pfam WD domain, G-beta repeat 34 68 IPR001680 GO:0005515
Mibi05g1528 335 Pfam WD domain, G-beta repeat 203 240 IPR001680 GO:0005515
Mibi05g1528 335 ProSiteProfiles Trp-Asp (WD) repeats profile. 37 68 IPR001680 GO:0005515
Mibi05g1528 335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 37 68 - -
Mibi05g1528 335 FunFam THO complex subunit 3 23 187 - -
Mibi05g1528 335 ProSitePatterns Trp-Asp (WD) repeats signature. 103 117 IPR019775 -
Mibi05g1528 335 CDD WD40 33 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1528 Mibi-ChrMibi05 18007551 18013053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1528 170 331 Miscellaneous Gene Families AT5G08390 23.926 7.99e-13 67.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g1528 05 18007551 18013053 Mibi05g1528 05 18007551 18013053 ECH