Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1377 ATGCTTCAGCTTCAGTCTTGTACATGTCGCTGTGCTTTCACAGCGAAACCATTTCCTTCCTCACAATCTATCTTCTCCGTTAGGGTTCGAAATCGTAAGTTCCCCCTCGGTGTTGCGAGAACAATTAGAGGTTGTTGTGGTTTCGACGGAGACTTAGATTCCGATGGTGAGCTAGATACGGTCCTTGCTGGTAAGAGGACGAATTACGCCGGCGTGCGCTTGGAGGAGACTGTAGATTCCGATTCTGGAAAGATTAGGCTCGATTCTTGGATCTCTTCTCGCATCAGAGGTATAAGTAGGGCTCGTGTGCAGTCAAGTATTAAAGCTGGCCTTGTTCATGTCAATGGCCGTCCTGTTGATAAGGTTTCTTTCAATGTCAAGGCTGGGGATAAGATCAATTGCACGATTTCAGAGTTACAACAGTTGAAAGCTGAGCCAGAACATATGGAGTTGGATATTGTTTATGAAGATGAGCATGTGCTAGTAATTAATAAGCCTGCGCACATGGTTGTGCATCCCGCGCCTGGAAATGCATCTGGTACTCTTGTCAATGGCATTCTTCACCATTGCAACCTTCCAAATGTTGAAATTTCAAATGGGGAAAACCTTTCAGAGACTGAAGATTCTGATGATGATTTTGATAGCTACTCTATTCGTCTAAGTTCCAGTGAAGGCTTACAATCACATTCCAGCATGAGTGGAGCATCGGTCCGCCCAGGGATTGTGCATAGGCTGGACAAAGGCACTAGTGGATTGCTTGTTGTGGCAAAGGATGAACATTCCCATAGCCATTTATCAGAGCAATTCAAACTACGTACTATCAAGAGGGTGTATGTCAGTCTCACTGTTGGGGTTCCCTCTCCAACTGCTGGGCGTGTCGAGGTTCCTGTTGGTCGTGACCCTAATAACCGGATTCGAATGACTGCTGTAGCTGGATCAGTTAATTCTAGAAAAGCCCGTTATGCTGCTAGTAGGTACAGAGTAACTGAGATACTTGCTAAGGGTGCTTGTGCATTGCTTGAATGGAAGTTAGAAACCGGGCGGACTCATCAGATACGTGCACACTCAAAATATCTAGGAGTACCTCTGCTGGGTGATGAGGTGTATGGAGGGACGAAGAGCATGGCCTTATCACTACTTCAGCCCAGAACACCGACGAGCTTGCGTGGCAAAATTGTACAAATGATTTCTAGGCTAGATAGGCCTTGCCTTCATGCTTTGACTCTTGGATTTCAGCATCCCCATACAGGAGAGCAGTTGCATTTTTCATGTCAACCCCCTACAGACTTCGATGAGATTTTGAACCAGCTTCGGAAAATTGGCTGA 1326 0.46 MLQLQSCTCRCAFTAKPFPSSQSIFSVRVRNRKFPLGVARTIRGCCGFDGDLDSDGELDTVLAGKRTNYAGVRLEETVDSDSGKIRLDSWISSRIRGISRARVQSSIKAGLVHVNGRPVDKVSFNVKAGDKINCTISELQQLKAEPEHMELDIVYEDEHVLVINKPAHMVVHPAPGNASGTLVNGILHHCNLPNVEISNGENLSETEDSDDDFDSYSIRLSSSEGLQSHSSMSGASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLSEQFKLRTIKRVYVSLTVGVPSPTAGRVEVPVGRDPNNRIRMTAVAGSVNSRKARYAASRYRVTEILAKGACALLEWKLETGRTHQIRAHSKYLGVPLLGDEVYGGTKSMALSLLQPRTPTSLRGKIVQMISRLDRPCLHALTLGFQHPHTGEQLHFSCQPPTDFDEILNQLRKIG 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1377 441 Pfam S4 domain 86 132 IPR002942 GO:0003723
Mibi05g1377 441 ProSitePatterns Rlu family of pseudouridine synthase signature. 242 256 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mibi05g1377 441 SUPERFAMILY Alpha-L RNA-binding motif 84 172 - -
Mibi05g1377 441 Gene3D Pseudouridine synthase 152 199 - -
Mibi05g1377 441 Gene3D Pseudouridine synthase 213 441 - -
Mibi05g1377 441 ProSiteProfiles S4 RNA-binding domain profile. 85 158 - -
Mibi05g1377 441 CDD S4 85 164 - -
Mibi05g1377 441 SMART s4_6 85 143 IPR002942 GO:0003723
Mibi05g1377 441 CDD PseudoU_synth_RluA_like 160 411 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mibi05g1377 441 FunFam RNA pseudouridine synthase 2 chloroplastic 72 140 - -
Mibi05g1377 441 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 87 436 - -
Mibi05g1377 441 SUPERFAMILY Pseudouridine synthase 145 438 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mibi05g1377 441 Gene3D - 70 141 IPR036986 GO:0003723
Mibi05g1377 441 Pfam RNA pseudouridylate synthase 159 356 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1377 Mibi-ChrMibi05 16369397 16372482 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g1377 05 16369397 16372482 Mibi05g1377 05 16369397 16372482 ECH