Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0405 ATGATGCCATTGTATCTCTCTGAGACTATATCCTTCAGGAATGATATCATCTTCCATTCGTTAATGAAACTTCTAACTTTACCGAGCATTTGCAAACGGCGGATCCTTATTGTATCCCCAACCTTTTTAGTTTTTGAGGCGAGAGTTCTGTTCTGTGTTGGTGGTGGTGGTGCCAGTGATCTCTGTCGTGTTCAGAACACGAGCACAATTGCGGCCATTGTCACATCCTTGGGGGGTCCACCTGGTGCTGTGGGAATCGTTCGGCTTTCGGGACCTTCTGCTGTGGATATCGCCAGTCGAGTGTTTCGACCTACCAGGAAAAGGAAGAAGACTACGTGGCAGCCCACTAGCCATGTCGTGGAGTATGGTATGGTGCTCGATACAGATGGGAATGTAATTGATGAGGTTTTAGTGGTGCCCATGTTAGCCCCGAGGTCTTACACTCGTGAAGACGTCATTGAGCTTCAATGTCATGGGAGTGAAGTGTGTCTACGCCGTGTATTGAGAACTTGTCTCGAAGCTGGAGCAAGACTTGCTGAACCAGGTGAATTTACTCTGCGTGCTTTTCTAAATGGTCGGTTAGATCTATCCCAAGCTGAAAATGTTGAAAGGCTAATAACAGCCAAATCTGTTGCTGCTGCTGATGCAGCACTGGCTGGAATCCAGGGTGGTTTCTCTTCTCTTGTTAGGTCACTGAGAATACAGTGCATTGAGTTGCTTACTGAGATTGAAGCTCGTTTAGATTTTGATGATGAGATGCCACCTTTAGATTTAAATTTATTAATGGATAAAATACATACTATGTCACAAGATGTACGGGATGCACTGGAGACAGCCAATTATGACAAGCTTCTTCAATCTGGATTACAGATAGCGATTGTTGGTCGTCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCTATAGTTACTGAAATTGCTGGAACCACCCGGGATGTGATTGAAGCAAGTGTCACCATCAATGGTATTCCTATAACCTTGCTTGATACTGCGGGAATCAGAGATACTGATGACATTGTAGAAAAGATTGGCGTAGAGAGATCTGAAGCAGTTGCTTTGGGAGCTGATTTGATTATCATGACTGTCAGTGCTCTTGAAGGGTGGACTTTGGAAGACACTAAACTTCTAGAAAGGATTCAATCTACTAAGAGATCAGTGGGATCTTCAACCCCTGCAATTCTTGTGATCAACAAAATGGATTGTGCTCCTGGTGCTGAGATTGGGTGGGCCAAAGTATGCCCCAATTTTTTCAGTAAACATGTGTTTACATGTGCTGTCACTGGCGAAGGATTACAGGAGTTAGAGAGGGTTGTGTTGGAGATAGTGGGTCTGAACAGCATTCCCACTGGGGGACGTAAATGGACTGTTAATCAGAGACAATGTGAACAGCTTGTTCGGACAAGGGATGCTTTTGATAGACTAAAAGCCTCGATAGAGGAGAAACTACCTCTGGATTTTTGGACAATTGATTTAAGGGATGCAGCATTGGCGCTTGGGCAGATCAGTGGAGAAGATATGTCGGAAGAGGTTTTATCCAATATATTTGGCAAGTTCTGTATCGGTAAATAG 1608 0.4434 MMPLYLSETISFRNDIIFHSLMKLLTLPSICKRRILIVSPTFLVFEARVLFCVGGGGASDLCRVQNTSTIAAIVTSLGGPPGAVGIVRLSGPSAVDIASRVFRPTRKRKKTTWQPTSHVVEYGMVLDTDGNVIDEVLVVPMLAPRSYTREDVIELQCHGSEVCLRRVLRTCLEAGARLAEPGEFTLRAFLNGRLDLSQAENVERLITAKSVAAADAALAGIQGGFSSLVRSLRIQCIELLTEIEARLDFDDEMPPLDLNLLMDKIHTMSQDVRDALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTINGIPITLLDTAGIRDTDDIVEKIGVERSEAVALGADLIIMTVSALEGWTLEDTKLLERIQSTKRSVGSSTPAILVINKMDCAPGAEIGWAKVCPNFFSKHVFTCAVTGEGLQELERVVLEIVGLNSIPTGGRKWTVNQRQCEQLVRTRDAFDRLKASIEEKLPLDFWTIDLRDAALALGQISGEDMSEEVLSNIFGKFCIGK 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0405 535 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 288 456 IPR031168 -
Mibi05g0405 535 TIGRFAM small_GTP: small GTP-binding protein domain 289 413 IPR005225 GO:0005525
Mibi05g0405 535 Gene3D - 289 463 IPR027417 -
Mibi05g0405 535 PANTHER TRNA MODIFICATION GTPASE GTPBP3 53 535 - -
Mibi05g0405 535 Pfam 50S ribosome-binding GTPase 290 411 IPR006073 GO:0005525
Mibi05g0405 535 FunFam tRNA modification GTPase MnmE 289 463 - -
Mibi05g0405 535 TIGRFAM mnmE_trmE_thdF: tRNA modification GTPase TrmE 82 535 IPR004520 GO:0003924|GO:0005525|GO:0006400
Mibi05g0405 535 Gene3D tRNA modification GTPase MnmE domain 2 194 535 IPR027368 -
Mibi05g0405 535 Pfam GTP-binding protein TrmE N-terminus 69 193 IPR018948 -
Mibi05g0405 535 Gene3D Probable tRNA modification gtpase trme; domain 1 56 193 IPR027266 GO:0005515
Mibi05g0405 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 451 IPR027417 -
Mibi05g0405 535 FunFam tRNA modification GTPase MnmE 64 193 - -
Mibi05g0405 535 CDD trmE 286 456 IPR031168 -
Mibi05g0405 535 Pfam MnmE helical domain 196 532 IPR025867 -
Mibi05g0405 535 Hamap tRNA modification GTPase MnmE [mnmE]. 68 535 IPR004520 GO:0003924|GO:0005525|GO:0006400
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0405 Mibi-ChrMibi05 3868621 3874701 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g0405 05 3868621 3874701 Mibi05g0405 05 3868621 3874701 ECH