Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0303 ATGGCCACTGTGCCTGCGCTCTCAAATCCTCACTCCTTTGCTAATAAACCTCTTCCGAAATCAACTCCATTGAATGCCAACATCACCTTTACTGTTCCATCTCCTTCTGTTTCCTCCAGGCCTCGTCCGCCTCTATGTTGTCGCAGGCGCACAACACCCGTTGTTGCTTCTGTGAAGGAGAATATGGGCCGCATTAAGAAAACAATTAACGATTTCGCCAGCTTGAACTACTGGGTTGTTCGTGATTACTATCGTCTGGTGGATTCTGTCAATTCCTTTGAACCGCAGATACAGGGACTCTCTGATGAGCAGTTGACTGCCAAAACTCAGGAGTTTCGGCTTCGGCTTAAGCGAGGGGATTCGCTTGCTGAAATTCAAGCTGAGGCATTTGCTGTTGTTCGTGAAGCTGCAAGAAGAAAACTTGGAATGCGCCATTTTGATGTCCAGATTATTGGCGGAGCGGTGCTTCATGATGGGTCCATTGCAGAAATGAAAACGGGGGAGGGAAAAACATTAGTTTCCACCTTAGCGGCTTATCTTAATGCCTTGACTGGCGAGGGTGTCCATGTGGTAACTGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGCCGTATTCATCGATTCTTAGGTCTTTCCGTGGGTCTTATTCAGAGGGGGATGACTGCTGAAGAGCGGAGATCCAATTATAGATGTGATATAACATATACCAACAATTCGGAACTTGGCTTTGACTACCTACGAGATAATCTTGCTGGAAGTAGTGGAGACCTTGTGATGAGATGGCCAATGCCATTTCATTTTGCAATTGTCGATGAAGTAGACTCTGTCCTGATAGATGAAGGAAGAAATCCTTTGTTAATTAGCGGTGAGGCCAGTAAAGATGCTGCACGATACCCTGTTGCTGCGAAAGTGGCTGAATTACTTATACGGGGAATTCATTATAATGTGGAGCTTAAAGATAATTCTGTTGAGTTGACTGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTGGAAACAAACGACCTTTGGGATGAAAATGACCCCTGGGCTAGATTTGTGATGAACGCATTGAAAGCTAAAGAATTCTATCGCCGAGATGTGCAATACATAGTCAGAGATGGGAAGGCCTTAATTATCAATGAGCTGACTGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTCTAAAGATTCAGGCAGATTCAGTTGTTGTGGCACAGATCACATACCAATCATTATTTAAACTCTATCCAAAGTTGTCAGGAATGACTGGAACTGCAAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTCCAGATGCCAGTAATCGAAGTGCCCACCAATCTCCCCAACATTCGGAAAGATTTGCCTATCCAAGCTTTTGCGGTAGGTCATTATTTATTTGTAATTGCTGCTTTTACTGCTCGGGGGAAATGGGAACAGGTTCGCCGCGAAGTTGATTATATGTTTAGACAAGGTCGTCCAGTCTTAGTTGGGACAACCAGTGTAGAAAATTCTGAATTGTTGTCTGGTCTTCTTAAGGAATGGAATATTCCCCATAATGTCCTGAATGCTCGACCTAAGTATGCTGCAAGAGAAGCTGAGGTTGTTGCACAGGCAGGGCGTAAGAATGCCATTACAATCTCTACAAATATGGCAGGCAGGGGCACGGATATAATCCTTGGTGGAAATCCAAAAATGCTAGCTAGAGAAATTCTAGAGGACAGCTTACTTTCGTTTTTGACTCCAGAGGCTTCAAATATTGAACTTGTTGGGGAGGCAATTTCACAGAAGGTGCTTCCAAAGATAAAGGTTGGATCATCGTCGCTGGCTTTATTGGCTAAGACAGCCTTAATGGCTAAATATGTATCCAAAAGTGAGGGTAAAAGCTGGGCATATCAGAAGGCTAAATCTTTTATCTCAGATGCTATTGAAATGAGTCAGTCACATAATTTGAATGAGTTGGAAAAGCTTGCAAATGAAGAATCTGAGATGTACCCTCTTGGTCCGACAGTAGCACTTGCCTATTTGTCAGTTTTGGAGGATTGTGAAAAGCATTGTTTGAATGAAGGGTCTGAGGTGAAAAGACTTGGGGGCCTTCATGTGATTGGCACATCTTTGCATGAGTCCCGAAGAATTGACAACCAGCTTCGTGGCAGAGCTGGAAGGCAGGGTGATCCTGGATCAACACGTTTTATGGTCAGCTTGCAGGATGAAATGTTTCAAAAATTCAATTTTGACACGGAATGGGCAGTGAGACTGATATCAAGGATTACAAATGATGAGGATATGCCAATTGAGGGTGATGCCATTGTCAAGCAGCTCTTAGGACTGCAAATCAATGCAGAGAAGTACTTCTTTGGTGTGAGAAAGAGCCTAGTTGAGTTTGACGAAGTGTTAGAGGTCCAACGAAAGCATGTTTATGACCTTAGGCAGTTAATACTAACAGGAGATGATGAAAGTTGTTCTCAACACATATATCAGTACATGCAAGCTGTGGTGGACGAGATTGTCTTTAATAACGTTGATCTGCAAAAGAATCCAGGTAGTTGGAATTTGGGTAAACTTATTAAGGAGTTTATGACAATTGGTGGAAAGCTGTTGCATGGGATTACGAGAGACACTTTGCTGAAGTCTCTTGAGCAATTGCATGATCTGGGTTCCATTGATATTGTCAACTTTTCCCTTCCAAATTTGCCAGCACCTCCAAATGCCTTTCGGGGAATTCGCCGGAAGGGTTCTTCATTAAGACGTTGGCTTACTATATGTTCTGATGATATAATCAAGGATGGGAATTTTCGGACAGTCGCTAATCTTCTTCGCAAGTGCCTTGGAGATTTTTTAATTGCTTCATATTTAAAAGTTGTTGAAGAGTCTGGTTATGACGAGAGGCATGTAAAGCAAATTGAGAGAGCAGTTCTTGTCAAAACTCTAGATAGCTTCTGGAGAGATCATCTTGTGAACATGAATAGGCTCAGTTCAGCGGTAAATGTGAGGAGTTTTGGACATAGAAATCCTCTTGAAGAGTACAAAATTGACGGTTGTCGGTTTTTCATCTCAATGCTTAGTGCAACTCGAAGGTTAACTGTGGAGTCACTGCTGCAATATTGGGCATCTCCAATGGAATCCCAAGAATTATTTGATTTCTAA 3189 0.4277 MATVPALSNPHSFANKPLPKSTPLNANITFTVPSPSVSSRPRPPLCCRRRTTPVVASVKENMGRIKKTINDFASLNYWVVRDYYRLVDSVNSFEPQIQGLSDEQLTAKTQEFRLRLKRGDSLAEIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMGRIHRFLGLSVGLIQRGMTAEERRSNYRCDITYTNNSELGFDYLRDNLAGSSGDLVMRWPMPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLIRGIHYNVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRKDLPIQAFAVGHYLFVIAAFTARGKWEQVRREVDYMFRQGRPVLVGTTSVENSELLSGLLKEWNIPHNVLNARPKYAAREAEVVAQAGRKNAITISTNMAGRGTDIILGGNPKMLAREILEDSLLSFLTPEASNIELVGEAISQKVLPKIKVGSSSLALLAKTALMAKYVSKSEGKSWAYQKAKSFISDAIEMSQSHNLNELEKLANEESEMYPLGPTVALAYLSVLEDCEKHCLNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISRITNDEDMPIEGDAIVKQLLGLQINAEKYFFGVRKSLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIYQYMQAVVDEIVFNNVDLQKNPGSWNLGKLIKEFMTIGGKLLHGITRDTLLKSLEQLHDLGSIDIVNFSLPNLPAPPNAFRGIRRKGSSLRRWLTICSDDIIKDGNFRTVANLLRKCLGDFLIASYLKVVEESGYDERHVKQIERAVLVKTLDSFWRDHLVNMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLLQYWASPMESQELFDF 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0303 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 761 IPR027417 -
Mibi05g0303 1062 SUPERFAMILY Helical scaffold and wing domains of SecA 784 881 IPR036266 -
Mibi05g0303 1062 MobiDBLite consensus disorder prediction 1 20 - -
Mibi05g0303 1062 TIGRFAM secA: preprotein translocase, SecA subunit 90 873 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mibi05g0303 1062 Gene3D - 84 461 IPR027417 -
Mibi05g0303 1062 Gene3D Helical scaffold and wing domains of SecA 923 1049 - -
Mibi05g0303 1062 PRINTS SecA protein signature 125 149 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mibi05g0303 1062 PRINTS SecA protein signature 179 189 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mibi05g0303 1062 PRINTS SecA protein signature 422 439 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mibi05g0303 1062 PRINTS SecA protein signature 232 252 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mibi05g0303 1062 PRINTS SecA protein signature 385 407 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mibi05g0303 1062 PRINTS SecA protein signature 459 472 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mibi05g0303 1062 PRINTS SecA protein signature 163 177 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mibi05g0303 1062 CDD SF2_C_secA 466 748 IPR044722 -
Mibi05g0303 1062 FunFam Protein translocase subunit SecA 920 1049 - -
Mibi05g0303 1062 Gene3D Helical scaffold and wing domains of SecA 783 898 - -
Mibi05g0303 1062 Pfam SecA DEAD-like domain 79 447 IPR011115 GO:0005524|GO:0016020|GO:0017038
Mibi05g0303 1062 FunFam Preprotein translocase SecA subunit 294 414 - -
Mibi05g0303 1062 Gene3D - 294 414 - -
Mibi05g0303 1062 ProSiteProfiles SecA family profile. 65 780 IPR014018 -
Mibi05g0303 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 461 IPR027417 -
Mibi05g0303 1062 SUPERFAMILY Pre-protein crosslinking domain of SecA 292 413 IPR036670 GO:0016020|GO:0017038
Mibi05g0303 1062 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 314 IPR014001 -
Mibi05g0303 1062 SMART SecA_PP_bind_2 293 404 IPR011130 GO:0016020|GO:0017038
Mibi05g0303 1062 FunFam Protein translocase subunit SecA 83 304 - -
Mibi05g0303 1062 Pfam SecA Wing and Scaffold domain 778 1049 IPR011116 GO:0016020|GO:0017038
Mibi05g0303 1062 Gene3D - 463 780 IPR027417 -
Mibi05g0303 1062 SUPERFAMILY Helical scaffold and wing domains of SecA 953 1059 IPR036266 -
Mibi05g0303 1062 Pfam SecA preprotein cross-linking domain 300 404 IPR011130 GO:0016020|GO:0017038
Mibi05g0303 1062 CDD DEXDc_SecA 104 460 - -
Mibi05g0303 1062 FunFam Protein translocase subunit SecA 783 898 - -
Mibi05g0303 1062 ProSitePatterns SecA family signature. 559 574 IPR020937 GO:0006605|GO:0006886|GO:0016020
Mibi05g0303 1062 Hamap Protein translocase subunit SecA [secA]. 64 1052 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mibi05g0303 1062 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 54 1059 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mibi05g0303 1062 SMART SecA_DEAD_2 65 448 IPR011115 GO:0005524|GO:0016020|GO:0017038
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0303 Mibi-ChrMibi05 2997397 3007455 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g0303 05 2997397 3007455 Mibi05g0303 05 2997397 3007455 ECH