Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0250 ATGCGTCACCGCGGCATGGATCCAGATGAGGAGGAGTACGGGGAGGAGTACGATGAGGACCAAGCGGTCGATGACGAGGAAGCGGAAGTGGAGGAGGAGGAGGAGGAGGAGGCTGACAGAGGAGCCTCCTCCAGGAAGAGGAGAAGATCTGGGTTTATAGACGACGACGCTGAGGAGGTCGACGAGGACGAAGAGGATGAGGAGGAGGAAGATGATGATTTTGATGAAAGAGGCGGTCGAAAGCGCCAATACAAGAGAATGGCTGCTTCCAATTTCTTCGACGAAGAGGCGCAGGTGGATAGCGATGAGGAAGAGGAAGAGGAAGAAGGCGAGGATGGTTTCATTGTTGAAGAAGGAACTGATCTACCGGATGAAGATGGTGGAAGGAGGATGCATAGCCGCCGTATGCTGCCTCATGATCAAGAAGATCATGAAGACCTTGAAGCTATGGCAAGGAGCATTCAAGAAAGATATGGAAGGCGTGTTGCAGATTATGATGAAGAAGCTACAGATGTAGAGCAGCAAGCACTTCTGCCATCTGTGAGAGATCCAAAACTGTGGATGGTTAAATGTGCGATTGGTCGAGAGCGTGAGGCGGCTGTTTGCCTCATGCAAAAGTCTATTGATAAAGGGTCTGAACTGCAAATAAGGTCTGTTGTTGCTCTTGATCATCTCAAAAATTACATATATGTTGAAGCTGATAAAGAAGCCCATGTGCGAGAGGCATGTAAAGGTCTACGCACCATATTTGCCCAGAAGATAACACTCGTTCCAATCAGAGAGATGACTGATGTTCTTTCAGTTGAAAGCAAAGCTATCGATCTTTCAAGAGATACATGGGTCAGAATGAAGATTGGGACATATAAGGGGGACCTTGCAAGAGTTGTGGATGTTGATAATGTACGGCAGAGGGTTACTGTGAAATTAATTCCGAGGATAGACTTACAAGCCCTTGCAAATAAATTGGAAGGAAGAGAAGTTGCAAAAAAGAAAGCATTTGTTCCTCCTCCTCGGTTTATGAATGTTGATGAAGCTAGGGAACTACATATCCGTGTAGAGCATAGACGTGACCCTATGACTGGGGAACGCTTTGAAACCATTGGAGGCATGATGTTCAAAGACGGTTTCTTGTACAAAACAGTATCAATAAAGTCAATCAGTGCTCAAAATATCAAACCTACGTTTGATGAACTTGAAAAATTTCGAAAACCGGGTGAGAATGGAGATGGAGATATAGCTAGTCTGTCGACATTATTTGCAAACAGAAAGAAAGGGCATTTTATGAAAGGCGATGCCGTTATTGTCATCAAGGGAGATCTAAAGAATTTGAAGGGGTGGGTGGAGAAAGTTGATGAGGATAATGTTCATATAAGGCCAGAAATCAAGGGCCTTCCAAAAGCTCTTGCTGTAAATGAAAGGGAACTTTGTAAATACTTTGAACCTGGGAACCACGTTAAAGTTGTTTCCGGCACACAAGAAGGGGCTACTGGTATGGTGGTGAAGGTGGAGCAGCATGTTCTGATTATTTTGTCTGATACAACAAAAGAACATATTCGTGTATTTGCTGATGATGTTGTGGAGAGTTCAGAAGTCACCACAGGAGTTACAAGAATTGGGGACTATGAGCTCCACGATCTTGTCCTGCTAGATAATTTGAGCTTTGGTGTGATAATACGTGTAGAAAGTGAGGCCTTTCAGGTTCTTAAGGGTGTTCCTGACAGACCTGAAGTTGCACTGGTGAAATTGAGGGAAATCAAGTGCAAGATTGATAAAAAAATAAGTGTGCAGGATAGGTTTAAGAATACAGTATCAACAAAGGATGTTGTACGGATAGTTGAGGGTCCCTGCAAAGGCAAGCAAGGACCAGTGGAGCACATATATAGAGGAGTCTTGTTCATCTTCGATCGACATCATCTTGAACATGCAGGCTTCATATGTTCAAAAGCTCAGTCATGTGTGGTTGTGGGAGGTTCACGGTCCCATGGCGATAGAAATGGTGATGCCTACTCAAGGTTTCCCAGCCTTAGAACTCCACCTCGAATTCCACAATCTCCTAGGAAGTTTTCTCGAGGAGGGCCGCCAATAAATTCTGGAGGCAGGCATAGAGGTGGAAGAGGGCATGATGGTTTGGCTGGTGCAACAGTTAAAATTCGCCAAGGTCCATATAAAGGTTATCGTGGGCGTGTTATAGAAGTCAATGGTACATCAGTTCGGGTTGAACTGGAGTCCCAAATGAAAGTTGTGACAGTTGATCGTAATCATATTTCTGATAATGTGACTGTAACCCCACAACGTGACACATCGCGGTATGGAATGGGAAGTGAGACCCCAATGCACCCTTCTCGAACTCCTTTGCATCCTTATATGACTCCTATGAGGGATCCTGGAGCCACACCAATTCACGATGGGATGAGAACTCCCATGCGTGATCGAGCGTGGAATCCTTACACTCCTATGAGTCCTGCAAGGGATTGGGAAGATGGAAATCCAGGCTCTTGGGGTACCAGTCCGCAATACCAGCCAGGGAGCCCTCCTTCACGAATGTATGAAGCTCCAACTCCTGGTGCTGGTTGGGCTAGTACTCCTGGTGGCAATTACAGCGAAGCTGGGACACCTAGGGACAATTCATATGCCAATGCTCCTAGTCCATATTTACCATCAACACCAGGTGGACAACCTATGACACCAAACTCAGCATCTTATCTTCCTGGCACCCCTGGAGGGCAGCCTATGACTCCAGGAACTGGTGGTCTGGACATGATGTCTCCAGTCATAGGCGCAGACAGTGAAGGACCGTGGTTTATGCCAGATATATTAGTCAATGTGCGTCGAGCTGGAGAGGAATCTATTGTGGGAATAACAAGAGAAGTGCTTCCGGATGGATCTTGCAGGGTAGCCCTGGGATCAAGTGGAAATGGCGAAACAATAACAGCTCTTCCCAGTGAAATGGAGGCTGTTGTACCGAGGAAATCAGACAAGATAAAGATTATGGGTGGTGCTCTGCGTGGTGCTACAGGCAAGTTGATTGGGGTAGATGGAACTGATGGTATTGTAAAGGTAGATGATACACTGGATGTGAAAATTTTAGACTTAGTCATTCTAGCTAAATTAGCTCAATCGTGA 3123 0.4573 MRHRGMDPDEEEYGEEYDEDQAVDDEEAEVEEEEEEEADRGASSRKRRRSGFIDDDAEEVDEDEEDEEEEDDDFDERGGRKRQYKRMAASNFFDEEAQVDSDEEEEEEEGEDGFIVEEGTDLPDEDGGRRMHSRRMLPHDQEDHEDLEAMARSIQERYGRRVADYDEEATDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKSIDKGSELQIRSVVALDHLKNYIYVEADKEAHVREACKGLRTIFAQKITLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLARVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKAFVPPPRFMNVDEARELHIRVEHRRDPMTGERFETIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGENGDGDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKALAVNERELCKYFEPGNHVKVVSGTQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTRIGDYELHDLVLLDNLSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKIDKKISVQDRFKNTVSTKDVVRIVEGPCKGKQGPVEHIYRGVLFIFDRHHLEHAGFICSKAQSCVVVGGSRSHGDRNGDAYSRFPSLRTPPRIPQSPRKFSRGGPPINSGGRHRGGRGHDGLAGATVKIRQGPYKGYRGRVIEVNGTSVRVELESQMKVVTVDRNHISDNVTVTPQRDTSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPARDWEDGNPGSWGTSPQYQPGSPPSRMYEAPTPGAGWASTPGGNYSEAGTPRDNSYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVIGADSEGPWFMPDILVNVRRAGEESIVGITREVLPDGSCRVALGSSGNGETITALPSEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQS 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0250 1040 MobiDBLite consensus disorder prediction 763 786 - -
Mibi05g0250 1040 CDD KOW_Spt5_4 606 648 IPR041977 -
Mibi05g0250 1040 SUPERFAMILY Translation proteins SH3-like domain 419 457 IPR008991 -
Mibi05g0250 1040 SMART nusgn_4 183 269 IPR006645 GO:0140673
Mibi05g0250 1040 MobiDBLite consensus disorder prediction 798 909 - -
Mibi05g0250 1040 FunFam Transcription elongation factor SPT5 695 758 - -
Mibi05g0250 1040 Pfam Spt5 transcription elongation factor, acidic N-terminal 92 179 IPR022581 -
Mibi05g0250 1040 Gene3D - 274 316 IPR014722 -
Mibi05g0250 1040 ProSitePatterns Ribosomal protein L24 signature. 430 447 IPR005825 GO:0003735|GO:0005840|GO:0006412
Mibi05g0250 1040 PIRSF Spt5 3 1040 IPR017071 GO:0006357|GO:0032784
Mibi05g0250 1040 CDD KOW_Spt5_6 981 1038 IPR041980 -
Mibi05g0250 1040 Gene3D - 165 267 IPR036735 GO:0006355
Mibi05g0250 1040 FunFam Transcription elongation factor SPT5 165 267 - -
Mibi05g0250 1040 MobiDBLite consensus disorder prediction 96 121 - -
Mibi05g0250 1040 MobiDBLite consensus disorder prediction 75 89 - -
Mibi05g0250 1040 Pfam Early transcription elongation factor of RNA pol II, NGN section 185 266 IPR005100 -
Mibi05g0250 1040 Gene3D - 421 478 IPR014722 -
Mibi05g0250 1040 FunFam Transcription elongation factor SPT5 274 316 - -
Mibi05g0250 1040 FunFam Transcription elongation factor SPT5 481 530 - -
Mibi05g0250 1040 SMART kow_9 426 453 IPR005824 -
Mibi05g0250 1040 SMART kow_9 478 505 IPR005824 -
Mibi05g0250 1040 SMART kow_9 602 629 IPR005824 -
Mibi05g0250 1040 SMART kow_9 987 1014 IPR005824 -
Mibi05g0250 1040 SMART kow_9 274 301 IPR005824 -
Mibi05g0250 1040 SMART kow_9 708 735 IPR005824 -
Mibi05g0250 1040 MobiDBLite consensus disorder prediction 663 711 - -
Mibi05g0250 1040 FunFam Transcription elongation factor SPT5 421 478 - -
Mibi05g0250 1040 Gene3D - 481 530 IPR014722 -
Mibi05g0250 1040 MobiDBLite consensus disorder prediction 39 55 - -
Mibi05g0250 1040 Pfam KOW motif 712 742 IPR005824 -
Mibi05g0250 1040 Pfam KOW motif 481 508 IPR005824 -
Mibi05g0250 1040 MobiDBLite consensus disorder prediction 56 74 - -
Mibi05g0250 1040 CDD KOW_Spt5_3 478 528 IPR041976 -
Mibi05g0250 1040 MobiDBLite consensus disorder prediction 864 905 - -
Mibi05g0250 1040 CDD KOW_Spt5_2 427 477 IPR041975 -
Mibi05g0250 1040 CDD NGN_Euk 185 267 IPR039385 -
Mibi05g0250 1040 CDD KOW_Spt5_5 710 756 IPR041978 -
Mibi05g0250 1040 MobiDBLite consensus disorder prediction 1 140 - -
Mibi05g0250 1040 MobiDBLite consensus disorder prediction 11 38 - -
Mibi05g0250 1040 MobiDBLite consensus disorder prediction 122 140 - -
Mibi05g0250 1040 SUPERFAMILY Translation proteins SH3-like domain 470 529 IPR008991 -
Mibi05g0250 1040 PANTHER SUPPRESSOR OF TY 5 75 1017 IPR039659 GO:0006357|GO:0032784
Mibi05g0250 1040 Gene3D - 695 758 IPR014722 -
Mibi05g0250 1040 CDD KOW_Spt5_1 278 315 IPR041973 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0250 Mibi-ChrMibi05 2522189 2529434 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g0250 05 2522189 2529434 Mibi05g0250 05 2522189 2529434 ECH